PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8KG120400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 269aa MW: 31671.1 Da PI: 8.7706

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8KG120400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.7	2.5e-10	12	57	2	47
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 f+ +Y+ + GF+v+ks+++k+k +g++ +r +vC +eg+r+e+k++ Pavir.8KG120400.1.p 12 FWISYGGQKGFEVKKSNTNKRKSDGKVRCRIYVCANEGHRKEDKRD 57 999***************************************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.4E-6	12	57	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MEFSGTDEAW MFWISYGGQK GFEVKKSNTN KRKSDGKVRC RIYVCANEGH RKEDKRDHLT 60 NYTLHDHTNY LWGKHQQEMS YGQAGSMLMY FQVKSEENPS FQYALQMNRE EQIANIFWVD 120 AKMLTDYAYF GDVFGFDTTF GTNKESKPFW KQSWLDGIKM VKEIRAKCYM KDVFALGMRS 180 TQLKKNELNA EFESRKKIPR IKKRTPMLIQ ASKMYTPIIL EAFQGEYERL DENCTFEKEY 240 KYFGDPLEQT STCSCGMFSR TRILCNHT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8KG120400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012618	1e-101	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025877975.1	2e-50	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	Q10NE4	7e-74	Q10NE4_ORYSJ; Transposon protein, putative, unclassified

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	6e-07	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Pavir.8KG120400.1.p