PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG117600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 642aa MW: 69192.8 Da PI: 4.2266 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 56.5 | 9.5e-18 | 10 | 62 | 75 | 128 |
NAM 75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +t +gyWkatgkd+ ++ +g++vg kktLv+ + rap+ge+tdWvmhey+l Pavir.8KG117600.1.p 10 MSTTGDGYWKATGKDRFICG-GGRAVGNKKTLVYQHSRAPRGERTDWVMHEYTL 62 55799**************9.99*****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 24.44 | 1 | 85 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.71E-22 | 9 | 85 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.8E-8 | 12 | 62 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 642 aa Download sequence Send to blast |
MSNAGLAQPM STTGDGYWKA TGKDRFICGG GRAVGNKKTL VYQHSRAPRG ERTDWVMHEY 60 TLLADALPPA AQGRESYALY KLFQKSGAGP KNGEQYGAPF REEDWLDDDE EGVTAAAPAS 120 SVLNSNNCPA TVEDHAIADR ELPIEDLDEL LSQIGNDKEE FGEAQLDFST PATSHGQSQG 180 WLSEGGDKAE VVDASISSGA GVAAENTCTG LPLGDIEQLL MQMSDDHQNA ELFSDLSTSV 240 PQLQLQCDDH QVWLDAHREQ EVCAPDPTTS SSVAVTAECT DTEFGDLEGL LLQISNDQGM 300 VEPQSDLSGP IPYHNFNQVG IGDFHESHGA PVGNLSCIVQ ESTFDPQTEA RSKFPQSNLT 360 NVPFSGETNS SEGTSVPRSV SGLISYNSQD ADEEFLEIND FFDLEGVEQS ANCTATEHLI 420 SATNGMFDDL EYSDAHTFLP GPFDTVGVVA ENEFFYFGNT GIQDQGYQYT TEVTTQNQAA 480 LNVRSHMKHT HVVLPSHASG TLNLHTANEP PNRSSTASQS WFNAALSALL DSVPSSPALA 540 AEIENTVINK TLQRISSFRS HQASGEENTV INITLHRISS FRSQQAASEQ PSTPRIQVTR 600 GGRLMFISLL VILAAVMWTF TAGSAGSALN FCKGLWKSSS R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-14 | 7 | 91 | 90 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-14 | 7 | 91 | 90 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-14 | 7 | 91 | 90 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-14 | 7 | 91 | 90 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-14 | 7 | 91 | 90 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-14 | 7 | 91 | 90 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-14 | 7 | 91 | 90 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-14 | 7 | 91 | 90 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.12529 | 0.0 | callus| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG117600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802095.1 | 0.0 | NAC domain-containing protein 82-like | ||||
TrEMBL | A0A2S3H1B9 | 0.0 | A0A2S3H1B9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J03378.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9128 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 2e-44 | NAC domain containing protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG117600.1.p |