PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG105500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 232aa MW: 25445.6 Da PI: 8.2896 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.6 | 8.8e-18 | 106 | 160 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++keq Le+ F+++++++ ++ +LA++l+L +qV +WFqNrRa+ k Pavir.8KG105500.1.p 106 RTKKRLSKEQYGFLEDSFKEHSTLTPRQNSDLASRLNLGPQQVAIWFQNRRARTK 160 677889***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 107.7 | 8.6e-35 | 107 | 196 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 k+rlskeq +LE+sF+e+++L+p++ ++la++L+l p+qva+WFqnrRARtk +q+ +++e+Lkr + al++en+rL+ ev++Lr+ l Pavir.8KG105500.1.p 107 TKKRLSKEQYGFLEDSFKEHSTLTPRQNSDLASRLNLGPQQVAIWFQNRRARTKVQQTKEECEKLKRGCAALTQENRRLQGEVAQLRALL 196 69************************************************************************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.71 | 102 | 162 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.01E-17 | 104 | 169 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.9E-13 | 104 | 166 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.7E-15 | 106 | 160 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.02E-12 | 106 | 163 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-16 | 106 | 158 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 137 | 160 | IPR017970 | Homeobox, conserved site |
Gene3D | G3DSA:1.20.5.170 | 5.4E-4 | 159 | 195 | No hit | No description |
SMART | SM00340 | 1.1E-10 | 162 | 205 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MELELNLGVS PALAKGTARH MLTCTRAGDG EGHDELVLEL GVRTAKGDEL DNLETSMQPE 60 DVREEDLYQG CPQPTASAET GSVSSSLQVE VPMRQAAKDK GGFGGRTKKR LSKEQYGFLE 120 DSFKEHSTLT PRQNSDLASR LNLGPQQVAI WFQNRRARTK VQQTKEECEK LKRGCAALTQ 180 ENRRLQGEVA QLRALLTNPA SFAATNQLRS FGHCAAGPAR VDFSCTPRRR C* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG105500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004952725.1 | 2e-61 | homeobox-leucine zipper protein HOX7 | ||||
Refseq | XP_025799983.1 | 2e-61 | homeobox-leucine zipper protein HOX7-like | ||||
Swissprot | A2X674 | 4e-46 | HOX7_ORYSI; Homeobox-leucine zipper protein HOX7 | ||||
TrEMBL | A0A1E5VT78 | 2e-63 | A0A1E5VT78_9POAL; Homeobox-leucine zipper protein HOX7 | ||||
STRING | Pavir.Hb01447.1.p | 1e-170 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12894 | 30 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 3e-36 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG105500.1.p |