PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG098500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 188aa MW: 20303.4 Da PI: 7.6177 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 177.9 | 7.4e-55 | 1 | 177 | 49 | 233 |
GRAS 49 Laarlarsvselykalppsetsekn.sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpe 137 ++arl++s+ +ly+ lpp + + + + +++aa+++f+ +sP++kfsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+ Pavir.8KG098500.1.p 1 MSARLVSSCLGLYAPLPPASPAAARlHGRVAAAFQVFNGISPLVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPG 90 579*************77666655548899999********************************************************* PP GRAS 138 gppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL..rvkpgEalaVnlvlqlhrlldesvsleserd 225 gpp++R+Tg+g+ s ++l++tg+rL++fA++lg+pfef + va++ ++++++L v ++Ea+aV++ + h+l+d +++ ++ Pavir.8KG098500.1.p 91 GPPRVRLTGLGA----SMDALQATGKRLSDFADTLGLPFEFCA-VAEKAGNVDPDKLlgGVARREAVAVHWLH--HSLYDVTGNDSN--- 170 ************....***************************.7************99999**********9..899988888777... PP GRAS 226 evLklvks 233 +L+l+++ Pavir.8KG098500.1.p 171 -TLWLIQR 177 .8887766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 32.969 | 1 | 187 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.5E-52 | 1 | 177 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MSARLVSSCL GLYAPLPPAS PAAARLHGRV AAAFQVFNGI SPLVKFSHFT ANQAIQEAFE 60 REERVHIIDL DIMQGLQWPG LFHILASRPG GPPRVRLTGL GASMDALQAT GKRLSDFADT 120 LGLPFEFCAV AEKAGNVDPD KLLGGVARRE AVAVHWLHHS LYDVTGNDSN TLWLIQRCLA 180 PLLLHCY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-93 | 1 | 181 | 66 | 242 | Protein SCARECROW |
5b3h_D | 1e-93 | 1 | 181 | 66 | 242 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.8665 | 0.0 | callus| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in early stages of lateral root primordium formation, becoming restricted to the endodermal cell lineage at later stages. {ECO:0000269|PubMed:10948251}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the root endodermis and in a single file of cells through the quiescent center. {ECO:0000269|PubMed:10948251}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in establishing and maintaining the correct radial pattern in the root apical meristem. {ECO:0000269|PubMed:10948251}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG098500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF263457 | 0.0 | AF263457.1 Zea mays SCARECROW (SCR) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001168484.1 | 1e-114 | protein SCARECROW | ||||
Refseq | XP_021317511.1 | 1e-114 | protein SCARECROW | ||||
Swissprot | Q9FUZ7 | 1e-115 | SCR_MAIZE; Protein SCARECROW | ||||
TrEMBL | A0A1E5UKB1 | 1e-118 | A0A1E5UKB1_9POAL; Protein SCARECROW | ||||
TrEMBL | C0P5W3 | 1e-117 | C0P5W3_MAIZE; Uncharacterized protein | ||||
STRING | Sb05g001500.1 | 1e-115 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1371 | 38 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 3e-84 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG098500.1.p |
Publications ? help Back to Top | |||
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