PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG081000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 260aa MW: 27982.8 Da PI: 5.1271 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 41.5 | 4.2e-13 | 11 | 139 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWk. 84 p+ +F+Pt+ ++v +yL +++ g +++ +++ ++d +++ Pw+L +++ + ++ fF + +++ kr ra+ g+W Pavir.8KG081000.1.p 11 PAANKFDPTEADIVARYLLPRAVGFPNPHGHAVIDADPCSCPPWELMRRHGHAGSDHAFFGRPRSQ--DRKRIVRAVGpgedgvGGTWDg 98 77789*********************99988899************85554444555555555443..3468888744445555899*75 PP NAM 85 .atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++g ++ vls+ g L + +k + + Wvmh+yr+ Pavir.8KG081000.1.p 99 qKSGATRLVLSRAG-GGAAAPRLEV---TPQKIRTSGWVMHDYRI 139 57888999999543.3344445554...467777899******96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-21 | 6 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 18.876 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-7 | 13 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MEAYRFGFDL PAANKFDPTE ADIVARYLLP RAVGFPNPHG HAVIDADPCS CPPWELMRRH 60 GHAGSDHAFF GRPRSQDRKR IVRAVGPGED GVGGTWDGQK SGATRLVLSR AGGGAAAPRL 120 EVTPQKIRTS GWVMHDYRIV DPPHLADTVL YRVRITDRRK KEQGKQQQQA DADAVAGHQV 180 VIPPGPDQPG PSNYCEVEEH GGAVGDTGGY YADDDGSQYL NQDLSCYMLY DGDGSGDGDY 240 LFNVGDDNSF QCPDGGNGG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG081000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827521.1 | 1e-123 | NAC domain-containing protein 67-like | ||||
TrEMBL | A0A2T7CKQ6 | 1e-128 | A0A2T7CKQ6_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6Q2D9 | 1e-130 | A0A3L6Q2D9_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J02970.1.p | 1e-123 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14301 | 19 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.2 | 2e-08 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG081000.1.p |