PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG057900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 347aa    MW: 37160.4 Da    PI: 8.8374
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG057900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.29e-42672001128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkat 86 
                          lppG+rF Pt+eel+ +yL+++++g+  ++e+ i+ vdiy+++P++L++   +++  ++++w+fF++r++++ +g r+ r+t sgyWkat
  Pavir.8KG057900.1.p  67 LPPGYRFYPTEEELLGFYLRHRLAGTGPQVEHLIPVVDIYSHHPSQLRAmagAANVgDKEQWFFFCPRAERELNGGRPARTTPSGYWKAT 156
                          79****************************899**************85345223335669***************************** PP

                  NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          g+   v+s+  +++++g k+t+vfy+grap+g+kt+W m+ey++
  Pavir.8KG057900.1.p 157 GSPSYVYSAppTSRAIGEKRTMVFYQGRAPTGTKTRWKMNEYKA 200
                          ********9999999***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-4665226IPR003441NAC domain
PROSITE profilePS5100547.64867226IPR003441NAC domain
PfamPF023655.0E-2268199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MRNKTESSSS RLVPFLVKVN ARERGHGICS FFQASLQSSP PSTRSVWRKR AMESSNRSGS  60
DDHDPVLPPG YRFYPTEEEL LGFYLRHRLA GTGPQVEHLI PVVDIYSHHP SQLRAMAGAA  120
NVGDKEQWFF FCPRAERELN GGRPARTTPS GYWKATGSPS YVYSAPPTSR AIGEKRTMVF  180
YQGRAPTGTK TRWKMNEYKA VAADDAPPGA AVRLRNEFSV CRVYTSNGTL RSFDRRPLNP  240
PAAGVDDQTA AAHRCQEQEA PPPPPAAAGS QMAAVDVVVA AANGGQSSDE HSHGGSSSSG  300
SLGAVVDGAG AAAAAAAIDW DSLIPPVDYL RFGGADALSH VVWPPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-30592295168NO APICAL MERISTEM PROTEIN
1ut4_B3e-30592295168NO APICAL MERISTEM PROTEIN
1ut7_A3e-30592295168NO APICAL MERISTEM PROTEIN
1ut7_B3e-30592295168NO APICAL MERISTEM PROTEIN
3swm_A3e-30592298171NAC domain-containing protein 19
3swm_B3e-30592298171NAC domain-containing protein 19
3swm_C3e-30592298171NAC domain-containing protein 19
3swm_D3e-30592298171NAC domain-containing protein 19
3swp_A3e-30592298171NAC domain-containing protein 19
3swp_B3e-30592298171NAC domain-containing protein 19
3swp_C3e-30592298171NAC domain-containing protein 19
3swp_D3e-30592298171NAC domain-containing protein 19
4dul_A3e-30592295168NAC domain-containing protein 19
4dul_B3e-30592295168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG057900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828030.11e-132NAC domain-containing protein 90-like isoform X3
TrEMBLA0A3L6Q3I61e-132A0A3L6Q3I6_PANMI; NAC domain-containing protein 90-like
STRINGPavir.Hb01808.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.23e-63NAC domain containing protein 61