PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8KG048800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 455aa MW: 49803.6 Da PI: 6.512

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8KG048800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.7	7.8e-11	173	201	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka+i++Le Pavir.8KG048800.1.p 173 KTIRRLAQNREAARKSRLRKKAYIQQLES 201 6789***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.5E-7	169	244	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.4E-8	171	213	No hit	No description
PROSITE profile	PS50217	8.933	171	215	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.27E-7	173	208	No hit	No description
Pfam	PF00170	6.0E-8	173	202	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	176	191	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.1E-25	244	303	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MGETSSSSHS RQDPCALGYG FHGAIANSTP NFFDQEGGTY FGELEEAFMR QVASLRRTQA 60 ATTSTAHHGD ATPFSTATAA TATARPPPTL DIFPAWPMRS LHTPKKGSIL AADSTEDSES 120 SSKNNSNHSS DQQGATENMA SQFDQGSQQQ EEIQHKNMAT SSTTKSGKTL DPKTIRRLAQ 180 NREAARKSRL RKKAYIQQLE SSKLRLAQME QDMQRARSQG LFLGGTPGAN TSSGAAMFDV 240 EYARDLRAIV DDTLTHHDEL FQLKAMAAKS DVFHLITGVW TTPAERCFLW MGGFRPSDLL 300 KTLLPQLDPL TEQQLVGICN LQQSSQQAEE ALSQGLEQLH QSLADTMAGG SLIEDANMSF 360 MGQMALALGK LSNLEGFVIQ ADNLRQQTLH QMHRILTVRQ AARCFLAIGE YHNRLRALSS 420 LWASRPREML ATDEGNCEEI SIAAQPSQSQ FSAF*

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MGETSSSSHS RQDPCALGYG FHGAIANSTP NFFDQEGGTY FGELEEAFMR QVASLRRTQA  60
ATTSTAHHGD ATPFSTATAA TATARPPPTL DIFPAWPMRS LHTPKKGSIL AADSTEDSES  120
SSKNNSNHSS DQQGATENMA SQFDQGSQQQ EEIQHKNMAT SSTTKSGKTL DPKTIRRLAQ  180
NREAARKSRL RKKAYIQQLE SSKLRLAQME QDMQRARSQG LFLGGTPGAN TSSGAAMFDV  240
EYARDLRAIV DDTLTHHDEL FQLKAMAAKS DVFHLITGVW TTPAERCFLW MGGFRPSDLL  300
KTLLPQLDPL TEQQLVGICN LQQSSQQAEE ALSQGLEQLH QSLADTMAGG SLIEDANMSF  360
MGQMALALGK LSNLEGFVIQ ADNLRQQTLH QMHRILTVRQ AARCFLAIGE YHNRLRALSS  420
LWASRPREML ATDEGNCEEI SIAAQPSQSQ FSAF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.5607	0.0	callus\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8KG048800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF111321	0.0	KF111321.1 Zea mays cultivar B73 basic leucine zipper transcription factor mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828229.1	0.0	transcription factor TGAL4-like isoform X1
Swissprot	Q53Q70	0.0	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	A0A2S3ICM0	0.0	A0A2S3ICM0_9POAL; Uncharacterized protein
STRING	Pavir.Hb01807.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4444	36	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-124	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pavir.8KG048800.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]