PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG017800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 351aa    MW: 37127.8 Da    PI: 8.3581
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG017800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.12.2e-3962121261
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                          +e+al+cprCdstntkfCyynnys++qPryfCkaCrryWt+GG+lrnvPvGgg+rknk++
  Pavir.8KG017800.1.p  62 HEQALNCPRCDSTNTKFCYYNNYSTTQPRYFCKACRRYWTQGGTLRNVPVGGGCRKNKHK 121
                          7899******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2760120IPR003851Zinc finger, Dof-type
PfamPF027019.7E-3464120IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.08766120IPR003851Zinc finger, Dof-type
PROSITE patternPS01361068104IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEGSMDMISN TTTSNATAPS ALQNKQQEVA MVASPAREEA TAARNVKAKQ ASGGERKPRP  60
QHEQALNCPR CDSTNTKFCY YNNYSTTQPR YFCKACRRYW TQGGTLRNVP VGGGCRKNKH  120
KRTGGSGGSS SSAPSASSSS SSDPKKVNIT QQLMAMMPVA AAVTTDFPNV LPTLMSTSGS  180
FELPNYDHQL PFAPLSLSPN PSMTTSFLDM LRVGFLDGTS SNYGVRSNIN NGMVLPFLPP  240
SPFGAMQHGH GVIGDQQLVG GLQDVEEVKP IATEHGNING DGGLFGGGSS SGGAMQQGQQ  300
IVGGDGGNNN NSNNNSNNNS NNNSNNNSNN NNRAAEYYWQ GDLINNNSLI *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Seed endosperm. {ECO:0000269|PubMed:9207153}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG017800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807789.11e-157dof zinc finger protein PBF-like
SwissprotO244633e-61PBF_MAIZE; Dof zinc finger protein PBF
TrEMBLA0A2T7E4771e-158A0A2T7E477_9POAL; Uncharacterized protein
STRINGPavir.J13869.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.14e-37Dof family protein
Publications ? help Back to Top
  1. Lang Z, et al.
    Defining the Role of prolamin-box binding factor1 Gene During Maize Domestication.
    J. Hered., 2014 Jul-Aug. 105(4): p. 576-582
    [PMID:24683184]
  2. Zhang Z,Zheng X,Yang J,Messing J,Wu Y
    Maize endosperm-specific transcription factors O2 and PBF network the regulation of protein and starch synthesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(39): p. 10842-7
    [PMID:27621432]