PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG009900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | AP2 | ||||||||
Protein Properties | Length: 445aa MW: 49045.9 Da PI: 4.39 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.8 | 2e-16 | 76 | 136 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse...ng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k+ ++++lg ++t+e Aa+a++ a++k++g Pavir.8KG009900.1.p 76 SVYRGVTRHRWTGRFEAHLWDkHCLtslQNkKKgRQVYLGAYDTEEAAARAYDLAALKYWG 136 78*******************9988888445445*************************98 PP | |||||||
2 | AP2 | 56.9 | 5.3e-18 | 179 | 231 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GV +++ +grW+A+I + g +k+ +lg+f+t eeAaka++ a+ +++g+ Pavir.8KG009900.1.p 179 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTFDTQEEAAKAYDLAAIEYRGA 231 89****99**********99966...3.6*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.96E-12 | 76 | 145 | No hit | No description |
Pfam | PF00847 | 4.7E-14 | 76 | 136 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-17 | 76 | 145 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-17 | 77 | 145 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.89 | 77 | 144 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-28 | 77 | 150 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-6 | 78 | 89 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-13 | 179 | 230 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.64E-26 | 179 | 240 | No hit | No description |
SuperFamily | SSF54171 | 2.22E-18 | 179 | 240 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.2E-19 | 180 | 238 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.032 | 180 | 238 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-26 | 180 | 244 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-6 | 220 | 240 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MVMETRSPPP VSSPPSSSSS SISTEEIPQR KRARARTQAK GADKPKRPRK EAPRQTQSKD 60 DPADPAAPNA AAKRSSVYRG VTRHRWTGRF EAHLWDKHCL TSLQNKKKGR QVYLGAYDTE 120 EAAARAYDLA ALKYWGPETV LNFPAEDYSG EMSEMEGVSR EEYLASLRRR SSGFSRGVSK 180 YRGVARHHHN GRWEARIGRV FGNKYLYLGT FDTQEEAAKA YDLAAIEYRG ANAVTNFDIS 240 CYLDHPLLLA QLQQEPQVVP ALNQEPQPDQ SETTVQESDS SEVKTPDDNA EPDDNAEPDA 300 NAQADGSAEP LALNDSIDES LWSPCMDYEL EIMSISNFGS AEPLAVDDSI NESLWSPCMD 360 YELDIMSISN FGSSINLSEW FFDADFGSDI GCLFDGCSAV DEGSKDGVGL ADFSLFEEGD 420 GKQKDVISDM EEGIHPSTMI SVCN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 44 | 50 | PKRPRKE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.30079 | 1e-135 | callus| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG009900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038184 | 0.0 | BT038184.1 Zea mays full-length cDNA clone ZM_BFb0216H15 mRNA, complete cds. | |||
GenBank | KJ726910 | 0.0 | KJ726910.1 Zea mays clone pUT3455 AP2-EREBP transcription factor (EREB85) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807914.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A2S3H5G5 | 0.0 | A0A2S3H5G5_9POAL; Uncharacterized protein | ||||
STRING | Si026433m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5526 | 35 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 8e-77 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG009900.1.p |