PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG445700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YC | ||||||||
Protein Properties | Length: 129aa MW: 13568.4 Da PI: 7.5123 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 103.3 | 1.6e-32 | 22 | 108 | 19 | 99 |
NF-YC 19 helPlarikkilk......adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 h+lPlarikki+k ad +mis eaPv++skacelfi elt r+w + e krrt++k d+a+av++td fdflvd+v d Pavir.7NG445700.1.p 22 HALPLARIKKIMKrsagetADGGARMISGEAPVVFSKACELFIAELTRRAWAATLEGKRRTVHKEDVATAVQKTDLFDFLVDVVMAD 108 89**********955544457789***********************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.69E-26 | 18 | 101 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.9E-32 | 19 | 93 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.9E-18 | 24 | 92 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MRQARPYSGM FCGGVSARTG PHALPLARIK KIMKRSAGET ADGGARMISG EAPVVFSKAC 60 ELFIAELTRR AWAATLEGKR RTVHKEDVAT AVQKTDLFDF LVDVVMADAG GGGHAAAGQY 120 DDDDGALE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 5e-33 | 22 | 105 | 16 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG445700.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ234502 | 1e-126 | HQ234502.1 Zea mays clone BAC ZMMBBb0342E21 DNA-binding protein, peroxisomal-CoA synthetase, cleavage and polyadenylation specificity factor 5, DNA mismatch repair protein, and putative potassium efflux system protein family genes, complete cds; and unknown gene. | |||
GenBank | KJ727009 | 1e-126 | KJ727009.1 Zea mays clone pUT3990 CCAAT-HAP5 transcription factor (CA5P1) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825631.1 | 2e-77 | nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q8LCG7 | 7e-32 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A3L6QC27 | 2e-86 | A0A3L6QC27_PANMI; Nuclear transcription factor Y subunit C-2-like | ||||
STRING | Pavir.Gb00223.1.p | 1e-88 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11658 | 33 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 4e-31 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG445700.1.p |
Publications ? help Back to Top | |||
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