PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7NG441800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 348aa MW: 40667.5 Da PI: 6.6488

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7NG441800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.2	4.4e-26	88	178	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 fYn+YA++ GFsvrk+k ++ +r+g r+f Cs+eg+r+ + + ++ +rr+ra tr +C+akl++k+++ +g+w+v++++ eHnH l Pavir.7NG441800.1.p 88 FYNKYARDKGFSVRKQKVRRAQRSGALLFRRFLCSREGQRDAKWLDkEVCSRRPRALTRYDCQAKLEIKLDRsRGVWYVQNFVDEHNHRL 177 9*************************************998765368899**************999**************9 PP FAR1 90 a 90 a Pavir.7NG441800.1.p 178 A 178 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.2E-24	88	178	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.7E-11	300	342	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MSVVPSGSEV GHEEELDFHL EATDDISWDD DNILPARYPS SLEEDENGGY DEEMFRTISH 60 AADRHTTSDE YWDIVKKTFS SEAEAFFFYN KYARDKGFSV RKQKVRRAQR SGALLFRRFL 120 CSREGQRDAK WLDKEVCSRR PRALTRYDCQ AKLEIKLDRS RGVWYVQNFV DEHNHRLATQ 180 DEVPFLWSHR KMKDFQKTEI MAMEGVGIRK HVIMDVLQCR YGGYGKVGII RKDAYNFSSR 240 YKRSRIADGD AMAVLGLMQS RQNDDPDFYY DYQMDSDGHL KTMFWCDSQS RMDYQSFGDV 300 VIFDSTYRMN SYKMPFVPFV GMNHHRSTTV FGCGIVSDEH KTNTYSV*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MSVVPSGSEV GHEEELDFHL EATDDISWDD DNILPARYPS SLEEDENGGY DEEMFRTISH  60
AADRHTTSDE YWDIVKKTFS SEAEAFFFYN KYARDKGFSV RKQKVRRAQR SGALLFRRFL  120
CSREGQRDAK WLDKEVCSRR PRALTRYDCQ AKLEIKLDRS RGVWYVQNFV DEHNHRLATQ  180
DEVPFLWSHR KMKDFQKTEI MAMEGVGIRK HVIMDVLQCR YGGYGKVGII RKDAYNFSSR  240
YKRSRIADGD AMAVLGLMQS RQNDDPDFYY DYQMDSDGHL KTMFWCDSQS RMDYQSFGDV  300
VIFDSTYRMN SYKMPFVPFV GMNHHRSTTV FGCGIVSDEH KTNTYSV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7NG441800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015696943.1	1e-121	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	B9FM97	1e-114	B9FM97_ORYSJ; Uncharacterized protein
TrEMBL	Q2QQ59	1e-115	Q2QQ59_ORYSJ; Transposon protein, putative, unclassified
STRING	OB10G13790.1	1e-109	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-57	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.7NG441800.1.p