PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG439000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 299aa    MW: 30890.2 Da    PI: 6.2451
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG439000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271.1e-081865245
                         SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwq 45
                         g+WT e ++ + +a++ +  +     +W++Ia+ +  g+t+ +++ ++ 
  Pavir.7NG439000.1.p 18 GAWTREQEKAFENAIATMAEEadgdaRWEKIAEAVE-GKTADEVRRHYE 65
                         89*****************99***************.**********95 PP
2Myb_DNA-binding39.81e-12125169347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT++E+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
  Pavir.7NG439000.1.p 125 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 169
                          6*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.9231572IPR017884SANT domain
SMARTSM007171.9E-61670IPR001005SANT/Myb domain
PfamPF002497.8E-71865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-51865IPR009057Homeodomain-like
SuperFamilySSF466891.72E-92074IPR009057Homeodomain-like
CDDcd001671.61E-72068No hitNo description
PROSITE profilePS5129416.605118174IPR017930Myb domain
SuperFamilySSF466892.02E-16120175IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-17122172IPR006447Myb domain, plants
SMARTSM007179.3E-11122172IPR001005SANT/Myb domain
PfamPF002493.3E-11125169IPR001005SANT/Myb domain
CDDcd001673.14E-10125170No hitNo description
Gene3DG3DSA:1.10.10.609.6E-11125168IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MAVAEASSSG GGGEEGSGAW TREQEKAFEN AIATMAEEAD GDARWEKIAE AVEGKTADEV  60
RRHYELLVED VEGIDAGRVP LPTYAADGGA EEGGGGGKKG GGGGGSHGEK GSAKSAEQER  120
RKGIAWTEDE HRLFLLGLEK YGKGDWRSIS RNFVISRTPT QVASHAQKYF IRLNSMNRER  180
RRSSIHDITS VNNGDASAAQ GPITGQTNGQ AANPGKPSKQ PPHPANTPPG VDAYGTTIGQ  240
PVGGPLVSAV GTPVTLPVPA PPHMAYGMHA PVPGAVVPGA PVNIAPMPYP MPPPSSHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-161689678RADIALIS
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195103GGKKGGGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.133530.0leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG439000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0548090.0BT054809.1 Zea mays full-length cDNA clone ZM_BFb0071C23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823483.11e-168transcription factor SRM1
SwissprotQ9FNN61e-102SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A3L6PSD71e-168A0A3L6PSD7_PANMI; Uncharacterized protein
STRINGPavir.Gb00055.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63763854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.17e-86MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]