PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG434700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 695aa    MW: 77587.1 Da    PI: 4.8919
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG434700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.6e-07109132327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C +f++ G C  GdrC+F Hgp
  Pavir.7NG434700.1.p 109 MVPCYYFQK-GNCLKGDRCPFYHGP 132
                          789******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00142553IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.9812554IPR000571Zinc finger, CCCH-type
PfamPF156633.9E-122781No hitNo description
PROSITE profilePS5010311.315682IPR000571Zinc finger, CCCH-type
SMARTSM003560.45881IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6106132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.051106133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-6107131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4110132IPR000571Zinc finger, CCCH-type
PfamPF146080.27111131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MEVDGAAGTA AAGGAKPLTP EEEALRRSTD CVYFLASPLT CKKGNECDFR HSEGARMNPR  60
DCWYWLNGSC LNPKCSFRHP PIDGLFGAPT PGIPPVSSHY GAYSSGKQMV PCYYFQKGNC  120
LKGDRCPFYH GPQAAGNNTT DQAVKVSSLP LELPQAKKNE ETAAPNNLTQ QGARIIDDRS  180
MVHITKSGVG VTPTELASNA VESRPNSEQA PNSIPAAKKS FTVEEDHPMH YQNQLPVEGD  240
SVQDWNQNFQ IPPTDDLPQN SREADDFLGE SSPGFDVLVD NDADGAAYLH DEEDFGRDMY  300
PVEDYEYAPA DFDTQAHHES EQFNGMGENG QIGQLYDGYD RKRHRSSSER SIDRPFHSDR  360
TFHHRGLDRD EIDGSDLRHQ LRRRRINGPS TTISPERANG GRHWRDEHYR ERAHGVHHMH  420
NDRRQGPRGS TLSSRLQARI KLPGRSPDRV ETRFEDERDG RLRGRFSPAR RVDFHGGRNR  480
EPGKHQERSH QISSELVSSV RHADGLFRRD AVDSARFPAR RNFGEPRKAN GIVETEVSLD  540
FEGPKPLSVI LQRKREAAGG NNSSSNYEKS AEVAVMRTGF LVESEKKGCA NTIMSEDCKS  600
GLGDEEYKEE DDIPVEGHGQ SSSHGDKFEG EDAAEVDPEG NQEADNYDQR EGESDDYETI  660
EGHDYKSEDE NAYQDDEDLD DDDDFAQKVG VVFS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.71310.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG434700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823987.10.0zinc finger CCCH domain-containing protein 32-like
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A3L6PV300.0A0A3L6PV30_PANMI; Uncharacterized protein
STRINGPavir.J37523.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]