PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.7NG428600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 229aa MW: 23734.9 Da PI: 9.3629 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.8 | 1.6e-07 | 32 | 57 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C + Ck+Gd+C+FaH++ Pavir.7NG428600.2.p 32 KTRMCTKYNTVEGCKFGDKCHFAHSE 57 8999999999999***********95 PP | |||||||
2 | zf-CCCH | 37.4 | 4.3e-12 | 195 | 220 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC +f + GtC +G+rC+FaHg+ Pavir.7NG428600.2.p 195 YKTKLCENFVK-GTCTFGERCHFAHGE 220 9**********.*************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-13 | 29 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-8 | 30 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 30 | 58 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.23 | 30 | 57 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-4 | 33 | 57 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.1370.10 | 2.5E-15 | 98 | 168 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 9.4E-11 | 98 | 168 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.257 | 99 | 163 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.71E-14 | 101 | 163 | No hit | No description |
SuperFamily | SSF54791 | 4.53E-15 | 101 | 192 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 4.4E-11 | 101 | 164 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 6.5E-15 | 193 | 224 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-9 | 193 | 224 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.244 | 194 | 221 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-8 | 194 | 220 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-9 | 195 | 220 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence Send to blast |
MLNLGSPAVS APARAPADHA AVANSHPASM GKTRMCTKYN TVEGCKFGDK CHFAHSEREL 60 GKPAYMTHEA PPMGGRFGGR PEPPPPVAMG PPAGNFGASA TAKISVDASL AGGIIGKGGV 120 NTKQICRVTG VKLSIRDHES DPNLKNIELE GNFDQIKQAS NMVSDLIATI SASMPPKNPA 180 PAGGRGGAPG GRSNYKTKLC ENFVKGTCTF GERCHFAHGE NEQRRGAA* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.6038 | 0.0 | callus| root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.7NG428600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822781.1 | 1e-141 | zinc finger CCCH domain-containing protein 31 | ||||
Swissprot | Q7XPK1 | 1e-111 | C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31 | ||||
TrEMBL | A0A3L6PS93 | 1e-165 | A0A3L6PS93_PANMI; Zinc finger CCCH domain-containing protein 31 | ||||
TrEMBL | A0A3L6QAS7 | 1e-165 | A0A3L6QAS7_PANMI; Zinc finger CCCH domain-containing protein 31 | ||||
STRING | Pavir.Gb00110.1.p | 1e-166 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12130.1 | 4e-55 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.7NG428600.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|