PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG428600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 302aa MW: 31439.6 Da PI: 9.9453 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.3e-07 | 105 | 130 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C + Ck+Gd+C+FaH++ Pavir.7NG428600.1.p 105 KTRMCTKYNTVEGCKFGDKCHFAHSE 130 8999999999999***********95 PP | |||||||
2 | zf-CCCH | 36.9 | 6.3e-12 | 268 | 293 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC +f + GtC +G+rC+FaHg+ Pavir.7NG428600.1.p 268 YKTKLCENFVK-GTCTFGERCHFAHGE 293 9**********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-7 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.324 | 37 | 65 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.1 | 37 | 64 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-5 | 38 | 62 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 1.5 | 45 | 62 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-13 | 102 | 135 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.23 | 103 | 130 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-8 | 103 | 134 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 103 | 131 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-4 | 106 | 130 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.1370.10 | 4.5E-15 | 171 | 241 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 9.4E-11 | 171 | 241 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.257 | 172 | 236 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 7.2E-11 | 174 | 237 | IPR004088 | K Homology domain, type 1 |
SuperFamily | SSF54791 | 8.77E-15 | 174 | 265 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 4.57E-14 | 174 | 236 | No hit | No description |
SuperFamily | SSF90229 | 3.14E-9 | 266 | 297 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.7E-15 | 266 | 297 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.244 | 267 | 294 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-8 | 267 | 293 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-9 | 268 | 293 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MERAAAARKR SRPETANGAA AGGKRSKETE SFQTGQSSKS KPCTKFFSTI GCPFGEGCHF 60 LHFVPGGYPA VAKMLNLGSP AVSAPARAPA DHAAVANSHP ASMGKTRMCT KYNTVEGCKF 120 GDKCHFAHSE RELGKPAYMT HEAPPMGGRF GGRPEPPPPV AMGPPAGNFG ASATAKISVD 180 ASLAGGIIGK GGVNTKQICR VTGVKLSIRD HESDPNLKNI ELEGNFDQIK QASNMVSDLI 240 ATISASMPPK NPAPAGGRGG APGGRSNYKT KLCENFVKGT CTFGERCHFA HGENEQRRGA 300 A* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.6038 | 0.0 | callus| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG428600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822781.1 | 0.0 | zinc finger CCCH domain-containing protein 31 | ||||
Swissprot | Q7XPK1 | 1e-160 | C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31 | ||||
TrEMBL | A0A3L6PS93 | 0.0 | A0A3L6PS93_PANMI; Zinc finger CCCH domain-containing protein 31 | ||||
STRING | Pavir.Gb00110.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1254 | 38 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-53 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG428600.1.p |
Publications ? help Back to Top | |||
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