PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG413400.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 374aa    MW: 41304.2 Da    PI: 4.8302
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG413400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.55.5e-4961341129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtd el v+yLk+k+ gk+l++ ++i+e+d+yk+ PwdLp+  ++++++  wyfF++rd+ky++g r+nr+t  gyWkatgk
  Pavir.7NG413400.4.p   6 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAITEIDLYKFAPWDLPEkaSLESNDLVWYFFCPRDRKYSSGLRTNRSTGVGYWKATGK 94 
                          79****************************.89***************52355556669******************************* PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          d++v+  ++++vg+k+tLvf+ g+ p+g +tdWvm eyrle
  Pavir.7NG413400.4.p  95 DRPVFY-NSRTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 134
                          ******.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-603156IPR003441NAC domain
PROSITE profilePS5100555.1566156IPR003441NAC domain
PfamPF023655.3E-267133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MAKTSLPPGF RFHPTDVELT VYYLKRKLLG KHLRCNAITE IDLYKFAPWD LPEKASLESN  60
DLVWYFFCPR DRKYSSGLRT NRSTGVGYWK ATGKDRPVFY NSRTVGMKRT LVFHLGKPPR  120
GDRTDWVMYE YRLEDEELAA SGVKLDACVL CKIFQKSGLG PKIGAQYGAP FNEEDWNDAS  180
NAECSPFAPS VAPCAPESSH VGLNSAGQHL AVSYDGKVSL GPLSESNNEH AVNRVHPSRP  240
SSNIPIESIH IQLLAEMIRC SSTNLLCTAA EDGSLPDSTA GDDNEDGELL DDIETIFCGV  300
DELASQPVVN NSNHRDSCEH LIHRMPEARG TEQYLELNDL SFSLAEGPDS CGMLLSNEIS  360
VEQPFDLEPS VRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-52215711169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.186530.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG413400.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823524.10.0NAC domain-containing protein 82-like
RefseqXP_025823525.10.0NAC domain-containing protein 82-like
RefseqXP_025823526.10.0NAC domain-containing protein 82-like
RefseqXP_025823527.10.0NAC domain-containing protein 82-like
TrEMBLA0A3L6PX500.0A0A3L6PX50_PANMI; Uncharacterized protein
STRINGPavir.J14942.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.11e-81NAC domain containing protein 103