PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG413400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 406aa MW: 44762 Da PI: 4.7462 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.3 | 6.5e-49 | 6 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtd el v+yLk+k+ gk+l++ ++i+e+d+yk+ PwdLp+ ++++++ wyfF++rd+ky++g r+nr+t gyWkatgk Pavir.7NG413400.1.p 6 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAITEIDLYKFAPWDLPEkaSLESNDLVWYFFCPRDRKYSSGLRTNRSTGVGYWKATGK 94 79****************************.89***************52355556669******************************* PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 d++v+ ++++vg+k+tLvf+ g+ p+g +tdWvm eyrle Pavir.7NG413400.1.p 95 DRPVFY-NSRTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 134 ******.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-60 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.156 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.3E-26 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MAKTSLPPGF RFHPTDVELT VYYLKRKLLG KHLRCNAITE IDLYKFAPWD LPEKASLESN 60 DLVWYFFCPR DRKYSSGLRT NRSTGVGYWK ATGKDRPVFY NSRTVGMKRT LVFHLGKPPR 120 GDRTDWVMYE YRLEDEELAA SGVKLDACVL CKIFQKSGLG PKIGAQYGAP FNEEDWNDAS 180 NAECSPFAPS VAPCAPESSH VGLNSAGQHL AVSYDGKVSL GPLSESNNEH AVNRVHPSRP 240 SSNIPIESIH IQLLAEMIRC SSTNLLCTAA EDGSLPDSTA GDDNEDGELL DDIETIFCGV 300 DELASQPVVN NSNHRDSCEH LIHRMPEARG TEQYLELNDL SFSLAEGPDS CGMLLSNEIS 360 VEQPFDLEPR FERDSVDCIS NTVNTSTSTA DGSFPSVCAV DVHRT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-52 | 2 | 157 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.18653 | 0.0 | callus| leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG413400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823524.1 | 0.0 | NAC domain-containing protein 82-like | ||||
Refseq | XP_025823525.1 | 0.0 | NAC domain-containing protein 82-like | ||||
Refseq | XP_025823526.1 | 0.0 | NAC domain-containing protein 82-like | ||||
Refseq | XP_025823527.1 | 0.0 | NAC domain-containing protein 82-like | ||||
TrEMBL | A0A3L6Q3T0 | 0.0 | A0A3L6Q3T0_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J14942.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14856 | 17 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 2e-81 | NAC domain containing protein 103 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG413400.1.p |