PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG401200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 974aa    MW: 110141 Da    PI: 7.972
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG401200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.25.7e-23217300190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          ++Y +YA ++GFsvrk    k+++n    +r + Cs+eg r++++ k     r+r+etr+gC a++ +k++ +gk++vt+++++HnH+la
  Pavir.7NG401200.1.p 217 EYYVSYAGNMGFSVRKGWLDKTSKNS-NRSRVYICSREGLRSKNDAK-----RPRPETRMGCPARIAIKLTPSGKYRVTEFVEDHNHQLA 300
                          69*******************97666.899************99887.....************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-20217300IPR004330FAR1 DNA binding domain
PfamPF105515.8E-25396489IPR018289MULE transposase domain
PROSITE profilePS5096610.262663710IPR007527Zinc finger, SWIM-type
SMARTSM005750.0028685712IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 974 aa     Download sequence    Send to blast
MSYTPPFYSI PQASSSRSHH WSTTMATPST SGDPAAAGEP APTPSVEPTQ RRHPTSRISH  60
IVRTYLDLSS SKKRRAFPKS QPKAGGQETR AAEDETDGSE AGLPSSHPSR LLRELGIHVS  120
RYTHEERRGI ILRYMQKRSG RQAVNRAASK VPSRQALAER RRRGAGGKFL GKEDAQTADN  180
PEGKAEEEPE LPPEVVSNAG GVPIVGMIFE SEEKAYEYYV SYAGNMGFSV RKGWLDKTSK  240
NSNRSRVYIC SREGLRSKND AKRPRPETRM GCPARIAIKL TPSGKYRVTE FVEDHNHQLA  300
APFDIEMLKS QRMLAKAQPG SQASGIPPGY KNYLRSKSTK DMKSGDLRAL MDYFRRMKSD  360
NPSFYYAIQV DENDKVANVF WADARSILDY HYFCDVVCFD MIYKQNDCSR PLALFLGMNH  420
HRQMVIFGAA FLYDETVESF KWLLETFKSA MCGKHPKTIL TDRSAPLKEA LGLTWPGTMH  480
RFCVWQIYQS TVKSVAHMFC TSEEFTHDFR HCVFDIEDEQ EFVDTWNMIM EKYNLRENEL  540
LIKLYEDREH WAMPYNRQIF SGGIQSMVHT ENVGTRLEAY LGCDTDLSSF LKFFQCSAEK  600
RRQAEMQADY QANQGVPRIP LPFLWQAANL YTPITFDLFR RECELSLDCM AYGCGEFGSL  660
SEYMVTVKNK TKDQLVRFDS SNGTVACTCK KFENAGLLCG HILKVYELRN VKEIPPQYFL  720
KRWRKDAKLV TMEEADGFNF ESDTKFSVPG RYAALCRLFY KIAAKAAENI ETFALMASQS  780
DQLLAEVEGT LRSTLADKSS GYSFTDQLTH MAQNDYLLNS SHEALGSTGK KCEVTRRRND  840
PETNKRKKVR TGQSDETKGG PSGEMNIIPG SVQTETRNTS NPFIPDQLMQ GHYVLGHNFG  900
LGISQNLHDN LNQFGQASLV STLQQQQQFP GNGQLTQGYP GDMHALQFVE TTPQIDHQNG  960
DEGQSSIPVW DFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261265KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.332271e-146callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG401200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825112.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2T8IDX40.0A0A2T8IDX4_9POAL; Uncharacterized protein
STRINGPavir.Gb00517.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-112FAR1-related sequence 5