PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG399000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 188aa MW: 21441.3 Da PI: 9.7442 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.6 | 9.3e-18 | 23 | 69 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+ellP++ +K +K+++L +A++Y+ksLq Pavir.7NG399000.1.p 23 FHNFSERRRRDRINEKLKALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 69 59*************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 9.4E-20 | 16 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.527 | 19 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.87E-18 | 22 | 73 | No hit | No description |
SuperFamily | SSF47459 | 2.22E-21 | 22 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-15 | 24 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-18 | 25 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MEDGGVPRRS TPPTTRRSRS AEFHNFSERR RRDRINEKLK ALQELLPNCT KTDKVSMLDE 60 AIDYLKSLQL QLQMLVMGKG MAPVVPPELQ QYMHYITADP AQMPPLRPSG QQPRPFQITQ 120 ANSHRQSNVE SDFLSQMQNL HPSEPPQNFL RPPKLQLYTP EQRGGLASTS HNGGWIPERS 180 SSYNFME* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 27 | 32 | ERRRRD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.31775 | 0.0 | callus |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG399000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826117.1 | 1e-133 | transcription factor PIF1-like | ||||
Refseq | XP_025826118.1 | 1e-133 | transcription factor PIF1-like | ||||
TrEMBL | A0A2S3IAI4 | 1e-132 | A0A2S3IAI4_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7D023 | 1e-132 | A0A2T7D023_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6PTD7 | 1e-132 | A0A3L6PTD7_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Gb00491.1.p | 1e-136 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9562 | 30 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.1 | 6e-28 | phytochrome interacting factor 3-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG399000.1.p |