PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG398500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 240aa    MW: 26228.8 Da    PI: 8.4691
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG398500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1631.1e-50111451128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhP+d+elv +yL++k++g    +    ++ +vd++k+ePw+Lp ++  + +ewyfFs +d+kyatg+r+nrat+sgyWkatgk
  Pavir.7NG398500.1.p  11 LPPGFRFHPRDDELVLDYLCRKLSGGGggTYGGIAMVDVDLNKCEPWELPDEACVGGREWYFFSLHDRKYATGQRTNRATRSGYWKATGK 100
                          79**********************999643333469999***********7666789********************************* PP

                  NAM  89 dkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d+++  +      g+ vg++ktLvf++grap+g+kt+Wvmhe+r+
  Pavir.7NG398500.1.p 101 DRPISISgrragAGTMVGMRKTLVFHQGRAPRGSKTEWVMHEFRV 145
                          *****98666655566***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-573172IPR003441NAC domain
PROSITE profilePS5100555.2111172IPR003441NAC domain
PfamPF023657.4E-2612145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSLISMMEAR LPPGFRFHPR DDELVLDYLC RKLSGGGGGT YGGIAMVDVD LNKCEPWELP  60
DEACVGGREW YFFSLHDRKY ATGQRTNRAT RSGYWKATGK DRPISISGRR AGAGTMVGMR  120
KTLVFHQGRA PRGSKTEWVM HEFRVEGPAV AVAGRPCSPP KEDWVLCRVF YKSRTTAARP  180
ASTDETASLS SELISLSLPH MAPAADAYLA FDHGAAPAID GYYQQQGDAG LPVPALHHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-51617912171NO APICAL MERISTEM PROTEIN
1ut4_B5e-51617912171NO APICAL MERISTEM PROTEIN
1ut7_A5e-51617912171NO APICAL MERISTEM PROTEIN
1ut7_B5e-51617912171NO APICAL MERISTEM PROTEIN
3swm_A5e-51617915174NAC domain-containing protein 19
3swm_B5e-51617915174NAC domain-containing protein 19
3swm_C5e-51617915174NAC domain-containing protein 19
3swm_D5e-51617915174NAC domain-containing protein 19
3swp_A5e-51617915174NAC domain-containing protein 19
3swp_B5e-51617915174NAC domain-containing protein 19
3swp_C5e-51617915174NAC domain-containing protein 19
3swp_D5e-51617915174NAC domain-containing protein 19
4dul_A5e-51617912171NAC domain-containing protein 19
4dul_B5e-51617912171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG398500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9630310.0EU963031.1 Zea mays clone 247548 NAC domain-containing protein 21/22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824710.11e-151NAC domain-containing protein 21/22-like
SwissprotQ84TE62e-73NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2S3IAF01e-150A0A2S3IAF0_9POAL; Uncharacterized protein
STRINGPavir.Gb00488.1.p1e-176(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.22e-73NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]