PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG369700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 448aa    MW: 46826.3 Da    PI: 6.7241
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG369700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH154.4e-053363731254
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++  L++l+ +      +K + a++L +++eYIk L
  Pavir.7NG369700.1.p 336 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 373
                          677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.182324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.73E-5334377No hitNo description
SuperFamilySSF474595.37E-11334390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-8338381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MGDHAEMLHA APAVVYSGAG AGGAVPHGGG WWNAAVPAPT CSTDLAGFGT WSAALAASYD  60
IAVEGGKAKS TTTASSESPG NNSSVTFQEP TGVADPVVGI GAAVHQQPLA AGYTDWTHPY  120
MSGGATLHGF QQDGHQDMSS RTEQQSPMAA SSLMSPSSNN LALQGHHQEQ DHHHQQLLSS  180
FGSELLLSPT SPYGFQSSSL LRSLMEPTAP AAAKPALPGF VQQYDQYGQQ MGQQASPAAA  240
RFAPGAIREP LQFTNDAPFW NSSAGFGVPA AAVPDEASVR SVKPSPAPRA ATVALKTAFE  300
GVGESSPIIN KKANGEPAFK KPRLQTPSPL PTFKVRKEKL GDRITALQQL VSPFGKTDTA  360
SVLHETIEYI KFLHDQVGAL SAPYLKNGPQ VHVPQLKSSS PEKSKDDSHG EISLKGRGLC  420
LVPISSTFAV ASEVPVDFWT PFGANFR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.114380.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG369700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0682561e-109BT068256.1 Zea mays full-length cDNA clone ZM_BFb0111F04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822972.10.0transcription factor bHLH112-like
TrEMBLA0A2T7D0H70.0A0A2T7D0H7_9POAL; Uncharacterized protein
STRINGSi010139m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.34e-49bHLH family protein