PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG369100.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 252aa MW: 27587.9 Da PI: 6.2246 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.8 | 2.9e-29 | 165 | 219 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWt+e+H+rF++av+qLGG e+A Pk+il++m+v+gLt+++vkSHLQkY+l Pavir.7NG369100.4.p 165 KVRRRWTTEMHDRFIDAVNQLGGCENAKPKAILDIMNVEGLTRDQVKSHLQKYKL 219 679**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.923 | 162 | 222 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.63E-18 | 163 | 221 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.2E-28 | 163 | 220 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-23 | 165 | 220 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.2E-9 | 167 | 218 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MMHGRFPNLL PSIVQSLNAE ILYSNPISHS GVSEQPLRGI FPGLPAETTH SADHLGGLLN 60 NNGIDSVEKQ PDSGSVRDPN ESDERDERLT CLGHGGLDDT IPADMTLNYP QMAESTHVSS 120 PLNSETWQLE HIVHQLVSVP TIPGQLYPTV SPPATINVHS PQRTKVRRRW TTEMHDRFID 180 AVNQLGGCEN AKPKAILDIM NVEGLTRDQV KSHLQKYKLA QVRHRSSEVG GTLVGTTTSN 240 EAIPSDVQMC R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-18 | 165 | 223 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-18 | 165 | 223 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-18 | 165 | 223 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-18 | 165 | 223 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-18 | 165 | 223 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-18 | 165 | 223 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-18 | 165 | 223 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-18 | 165 | 223 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG369100.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825635.1 | 1e-161 | protein PHOSPHATE STARVATION RESPONSE 2-like isoform X1 | ||||
TrEMBL | A0A2T7CXL8 | 1e-163 | A0A2T7CXL8_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8ID28 | 1e-163 | A0A2T8ID28_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J07757.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.4 | 7e-20 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG369100.4.p |