PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG369100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 359aa    MW: 39078.9 Da    PI: 6.226
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG369100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like925.1e-29165219155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k r+rWt+e+H+rF++av+qLGG e+A Pk+il++m+v+gLt+++vkSHLQkY+l
  Pavir.7NG369100.1.p 165 KVRRRWTTEMHDRFIDAVNQLGGCENAKPKAILDIMNVEGLTRDQVKSHLQKYKL 219
                          679**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.923162222IPR017930Myb domain
SuperFamilySSF466891.16E-17163221IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27163220IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-23165220IPR006447Myb domain, plants
PfamPF002497.3E-9167218IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MMHGRFPNLL PSIVQSLNAE ILYSNPISHS GVSEQPLRGI FPGLPAETTH SADHLGGLLN  60
NNGIDSVEKQ PDSGSVRDPN ESDERDERLT CLGHGGLDDT IPADMTLNYP QMAESTHVSS  120
PLNSETWQLE HIVHQLVSVP TIPGQLYPTV SPPATINVHS PQRTKVRRRW TTEMHDRFID  180
AVNQLGGCEN AKPKAILDIM NVEGLTRDQV KSHLQKYKLA QVRHRSSEVG GTLVGTTTSN  240
EAIPSDVQIR IQKFALQVQI ELQKKLHEMV ERTRHDLLEI HRSILENHVM SLHELEEQQI  300
LNTDGRTVHL LPSPPAAAAA APPPVALSRM TGQGSRAAAS AEDAQASEAG SLGNNAVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-17165223260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-17165223260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-17165223260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-17165223260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-17165223260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-17165223260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-17165223260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-17165223260Protein PHOSPHATE STARVATION RESPONSE 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG369100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825635.10.0protein PHOSPHATE STARVATION RESPONSE 2-like isoform X1
TrEMBLA0A2T7CXB80.0A0A2T7CXB8_9POAL; Uncharacterized protein
TrEMBLA0A2T8ID140.0A0A2T8ID14_9POAL; Uncharacterized protein
STRINGPavir.J07757.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16835911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-24G2-like family protein