PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7NG333200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

TCP

Protein Properties

Length: 183aa MW: 18722.3 Da PI: 10.9376

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7NG333200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	35	4.9e-11	48	127	9	89
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssasnsssg......... 88 +++h+kv+gR+RRvR+++ caar WLl+qa+ +i ++tg+++++a +c+++ s ss ++ + Pavir.7NG333200.1.p 48 KDRHSKVNGRGRRVRMPIVCAAR------------------WLLRQAELSILAATGSGTTPAvFSCSSAPSTSSPAA---Aahpvlgkrp 116 8********************..................**************99999444522222222221...1122344444 PP TCP 89 ..........k 89 + Pavir.7NG333200.1.p 117 redhepapapA 127 44343333330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.6E-7	47	70	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MASRDAATTF QVYRPMPAPT PAPAPMSLAA AADVAAPAPK KASPGAGKDR HSKVNGRGRR 60 VRMPIVCAAR WLLRQAELSI LAATGSGTTP AVFSCSSAPS TSSPAAAAHP VLGKRPREDH 120 EPAPAPAPFW ATLQARPVAW GLSPAQEAAA QAYASVAAQQ GHHLNLLSVL SGAARPSEEE 180 SR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7NG333200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727696	2e-52	KJ727696.1 Zea mays clone pUT5635 TCP transcription factor (TCP14) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976294.1	9e-70	transcription factor PCF1
Swissprot	Q9FMX2	2e-19	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0A9DEW8	7e-79	A0A0A9DEW8_ARUDO; Uncharacterized protein
STRING	Pavir.J23534.1.p	4e-71	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-18	TCP family protein

Link Out ? help Back to Top
Phytozome	Pavir.7NG333200.1.p