PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG330100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 481aa    MW: 51174 Da    PI: 10.0677
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG330100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-16192239148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+W +eEd+llvd v+  G+g+W+  ++  g++R++k+c++rw +yl
  Pavir.7NG330100.1.p 192 KGPWAPEEDKLLVDFVQANGPGNWRMLPKLAGLNRCGKSCRLRWTNYL 239
                          79********************************************97 PP
2Myb_DNA-binding51.52.3e-16245290148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++TteE+  ++++++  G++ W+ Ia+ ++ gRt++++k++w+++l
  Pavir.7NG330100.1.p 245 RGPFTTEEHNSILHLHAIVGNK-WSMIAAQLP-GRTDNEIKNYWNTHL 290
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-22183242IPR009057Homeodomain-like
PROSITE profilePS5129418.256187239IPR017930Myb domain
SuperFamilySSF466895.87E-30189286IPR009057Homeodomain-like
SMARTSM007171.5E-12191241IPR001005SANT/Myb domain
PfamPF002494.5E-14192239IPR001005SANT/Myb domain
CDDcd001673.06E-9194239No hitNo description
PROSITE profilePS5129426.351240294IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-26243294IPR009057Homeodomain-like
SMARTSM007172.5E-14244292IPR001005SANT/Myb domain
PfamPF002496.1E-14245290IPR001005SANT/Myb domain
CDDcd001673.07E-10247290No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MLWYGKNKQR PGHAKVRAAP VWQPVAVPEG GELLGPHLWR LAGRPDRSRA VLDLRSTSRS  60
HRRIESTRFG AVLPISPPTI NYLQCSAAVL PISGPVLPCS SLCRRTTTLR WIKIKAVLAA  120
AAGENPSHLW PPGGSAYKSV GIYGHGSTHH SPLTPTPRRP RRRCRRHRGE REGKQPTAMG  180
RTPCCDSKGI KKGPWAPEED KLLVDFVQAN GPGNWRMLPK LAGLNRCGKS CRLRWTNYLR  240
PDIKRGPFTT EEHNSILHLH AIVGNKWSMI AAQLPGRTDN EIKNYWNTHL KKQLRQEALV  300
GADAAAAAQL ASAATASSCP AARHMAQWET ARLEAEARLS LLSSSAATTV TSATAASSSS  360
STAAAEHEAA PDIFLRLWNS AVGESFRCSA QGQGAAAARG PAAASAAEAG APAALPSGGG  420
GDDSSAASTN GTEAADDYQA FLDMAVEELA LLHGRLGVSF SAFPPADVLA EASCLFAPFE  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-261922947108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162RRPRRR
2157165RRPRRRCRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG330100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086211e-110AK108621.1 Oryza sativa Japonica Group cDNA clone:002-147-D04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825374.11e-152transcription factor MYB41-like
TrEMBLA0A2S3I8U31e-166A0A2S3I8U3_9POAL; Uncharacterized protein
TrEMBLA0A2T7CXW31e-166A0A2T7CXW3_9POAL; Uncharacterized protein
STRINGPavir.Gb00736.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54093157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.13e-65myb domain protein 17