PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG320500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRF
Protein Properties Length: 382aa    MW: 40971.9 Da    PI: 9.1054
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG320500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.62.5e-24114158145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+epgrCrRtDGKkWRC +++ +++k+CErH+hrgr+rsrk++e+
  Pavir.7NG320500.1.p 114 DPEPGRCRRTDGKKWRCAKEAAPDSKYCERHMHRGRNRSRKPVEA 158
                          79****************************************996 PP
2QLQ56.49.1e-205994237
                  QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                         +FTaaQ ++L++Q+l+yKyL+a++PvP +Ll++i++
  Pavir.7NG320500.1.p 59 PFTAAQYEELEHQALIYKYLVAGVPVPLDLLLPIRR 94
                         9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.6E-105894IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.4E-145993IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.0915994IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.773114158IPR014977WRC domain
PfamPF088798.6E-21115157IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MAMPFASLSP AADHRPSSLL PFCRAAPLSA VGEADAQQQH HQQQQQAMSG GRWAARPAPF  60
TAAQYEELEH QALIYKYLVA GVPVPLDLLL PIRRGFVYHQ PALGHGPYFG KKVDPEPGRC  120
RRTDGKKWRC AKEAAPDSKY CERHMHRGRN RSRKPVEAQL VAPPHAQQQA PAPTSGFQNQ  180
SPYPAVLAGN GVRGGGGGGG GGGVGTCTFG LGSRSTAQLH MDSAAAYATA AGGGSKDLRY  240
PAYGVRSLSD EHSQLMPAAM DNSMDNSWRL LPSQTPTFQA TSYPLFGTLS GLDESTIASL  300
PKTQREPLSF FGSDFVTVKQ ESQTLRPFFD EWPKARNSWP ELGDDNSLAS FSATQLSISI  360
PMATSDFSNT SSRSPSGIPS R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.93960.0callus| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG320500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5158450.0EF515845.1 Zea mays putative growth-regulating factor 6 (GRF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824804.10.0growth-regulating factor 3-like isoform X1
SwissprotQ6AWY60.0GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLA0A3L6QBD80.0A0A3L6QBD8_PANMI; Growth-regulating factor 3-like
STRINGPavir.Ga00724.1.p0.0(Panicum virgatum)
STRINGSi011853m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24633476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-43growth-regulating factor 5