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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.7NG318200.2.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
bHLH |
| Protein Properties |
Length: 465aa MW: 51522.5 Da PI: 4.8675 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.7NG318200.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 34.2 | 4.4e-11 | 264 | 310 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+a+ + Er RR+++N ++ +Lr l P++ +K++ a+i+ A+eYI +L
Pavir.7NG318200.2.p 264 KANFATERERREQLNVKYRTLRMLFPNP-----TKNDRASIVGDAIEYIDEL 310
57899***********************.....9***************998 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 465 aa
Download sequence Send
to blast |
MIAGGGYFES SHDQCLMAGS LIHDSSQIPK GNDDTSIELQ KFKVPSFSTE ALSRPTNFSS 60
EDVGGTNLLQ HQLGIDLEQE APPGETTSWD PSGCTIQDQI INHQFGEYPE NLLVEPEIQQ 120
YDAALYPNGA YTPAPDLLNL LRINVASAFP PATSVFGDPV LNGSNYLDLN GELTGVAAIP 180
DNGLMFTGDS SVHLGYHATQ PHLANDICHS LPQNYGLFPS EDEREVMIGA GSVGDLFQEI 240
DDRQFDSVLE CRRGKGEFGK GKVKANFATE RERREQLNVK YRTLRMLFPN PTKNDRASIV 300
GDAIEYIDEL NRTVKELKIL VEQKKHGNNR EKRIKLDHQA AADGESSSMK PIRDDQDNQL 360
NGSIRSSWVQ RRSKECHVDV RIVDDEVNIK LTEKKKDNSL FHAAKVLDEF QLDLIHAVGG 420
IIGDHHIFMF NTKVPEGSSV YACAVAKRLL EAVDAQHQTY NIFN*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in developing anthers from stage 8 to stage 10 (PubMed:23519457). Expressed in developing anthers from stage 7 to stage 11 with a peak at stages 8 and 9. Highly expressed in the tapetum (PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}. |
