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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.7NG318200.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
bHLH |
| Protein Properties |
Length: 478aa MW: 53181.4 Da PI: 4.9997 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.7NG318200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 34.2 | 4.6e-11 | 277 | 323 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+a+ + Er RR+++N ++ +Lr l P++ +K++ a+i+ A+eYI +L
Pavir.7NG318200.1.p 277 KANFATERERREQLNVKYRTLRMLFPNP-----TKNDRASIVGDAIEYIDEL 323
57899***********************.....9***************998 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 478 aa
Download sequence Send
to blast |
MIWREGSRYC FTKMIAGGGY FESSHDQCLM AGSLIHDSSQ IPKGNDDTSI ELQKFKVPSF 60
STEALSRPTN FSSEDVGGTN LLQHQLGIDL EQEAPPGETT SWDPSGCTIQ DQIINHQFGE 120
YPENLLVEPE IQQYDAALYP NGAYTPAPDL LNLLRINVAS AFPPATSVFG DPVLNGSNYL 180
DLNGELTGVA AIPDNGLMFT GDSSVHLGYH ATQPHLANDI CHSLPQNYGL FPSEDEREVM 240
IGAGSVGDLF QEIDDRQFDS VLECRRGKGE FGKGKVKANF ATERERREQL NVKYRTLRML 300
FPNPTKNDRA SIVGDAIEYI DELNRTVKEL KILVEQKKHG NNREKRIKLD HQAAADGESS 360
SMKPIRDDQD NQLNGSIRSS WVQRRSKECH VDVRIVDDEV NIKLTEKKKD NSLFHAAKVL 420
DEFQLDLIHA VGGIIGDHHI FMFNTKVPEG SSVYACAVAK RLLEAVDAQH QTYNIFN*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in developing anthers from stage 8 to stage 10 (PubMed:23519457). Expressed in developing anthers from stage 7 to stage 11 with a peak at stages 8 and 9. Highly expressed in the tapetum (PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}. |
