PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG315300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 340aa MW: 35779.4 Da PI: 7.8715 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.9 | 1.8e-13 | 90 | 141 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + + + a+i+ A++++k+L+ Pavir.7NG315300.1.p 90 QRMTHIAVERNRRRQMNEYLAVLRSLMPES---YVHRSDQASIVSGAIDFVKELE 141 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.27E-17 | 88 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.45E-15 | 88 | 145 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-14 | 88 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.402 | 89 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.8E-11 | 90 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-11 | 95 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MLQTPIDMTL EALCAPSTSS DVLVYDTFNA AAVSRAAASP GSFLFGNAPV VEPFPAPADA 60 EGANRVQQQG RRKRRRRQRT VKNAEDAESQ RMTHIAVERN RRRQMNEYLA VLRSLMPESY 120 VHRSDQASIV SGAIDFVKEL EQQLQSLEAQ KMALLQRRGD TASERGAPRA PDRGEAATNS 180 SASVTGEDAA ERAPDGGAGA EEASRASAVA DVEVGVVVDA HASLRVMARR RPGQLLKMVA 240 GMQALGLAVL HLNVTAAPGG LALYTLNLKV EEACGLTTAE DIAAAAHHVL CIIDAEAAAA 300 AAARSRRGAA GTLFGTCPRP LHRRGLPEHG TNCGCSSSA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 69 | 77 | GRRKRRRRQ |
2 | 70 | 76 | RRKRRRR |
3 | 71 | 75 | RKRRR |
4 | 71 | 78 | RKRRRRQR |
5 | 90 | 101 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG315300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825670.1 | 1e-121 | transcription factor bHLH96-like isoform X1 | ||||
TrEMBL | A0A3L6QAM5 | 1e-132 | A0A3L6QAM5_PANMI; Transcription factor bHLH96-like | ||||
STRING | Pavir.J15346.1.p | 1e-147 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3712 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 1e-39 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG315300.1.p |