PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG315200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 359aa MW: 39900.2 Da PI: 6.1059 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.4 | 5.7e-12 | 177 | 222 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g W +eE+ l++++ k +G g+Wk I++++ ++Rt+ q+ + qky Pavir.7NG315200.1.p 177 GFWNEEEHRLFLHGLKVYGRGNWKNISKYFVTTRTPVQISGHAQKY 222 77*****************************************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 70 | 6 | 68 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 13.325 | 171 | 227 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.14E-14 | 173 | 226 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-9 | 175 | 225 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-10 | 177 | 218 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-11 | 179 | 225 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.6E-9 | 179 | 222 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.60E-9 | 179 | 223 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MDPINFNGEW SASEIQIVRS LIARYNANNS YVGDMNKKNN DIVNEIQAMF PLKAKHQVIR 60 LYANLVVEMI QSGTGNNTYH FVEASENIMN NNYEIPVKDS TMNNTRVAQD VPCGHPAPQM 120 KSPLTEFGTM EKHRNEVTRD VVDHNFEIPI KDPTMDNIRA VHDVPRSQPA PQKKLTGFWN 180 EEEHRLFLHG LKVYGRGNWK NISKYFVTTR TPVQISGHAQ KYFLMQGNTS RKQRYSINDV 240 GLHDIEPGVQ NNTSGREGHA FDGGANNPNN YGASGQHTTM NNPDQVQSPI PYHASQANID 300 GSQAPAGAGA SNHQQMGATS SSTVPITEGA GGSQAAWTSD HLEDFFFEDE MMDMGDMF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG315200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966689.1 | 1e-112 | uncharacterized protein LOC101759880 | ||||
TrEMBL | A0A3L6PUM3 | 1e-173 | A0A3L6PUM3_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Gb00821.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10580.2 | 1e-20 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG315200.1.p |