PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG313800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 353aa MW: 37464.2 Da PI: 8.4936 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.2 | 2.5e-12 | 83 | 134 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ L +l+P++ + + + a+i+ A++++k+L+ Pavir.7NG313800.1.p 83 QRMTHIAVERNRRRQMNEYLAVLLSLMPES---YVHRSDQASIVSGAIDFVKELE 134 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-13 | 81 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-16 | 81 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.37E-13 | 81 | 138 | No hit | No description |
PROSITE profile | PS50888 | 14.538 | 82 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.0E-10 | 83 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.1E-10 | 88 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MTLEALCAPS TSSDVLVYDT FNAAAASCAA ASPRSFLFGN APVVEPFPAP ADAEGANRVQ 60 QQGRRKRRRR QRTVKNAEDA ESQRMTHIAV ERNRRRQMNE YLAVLLSLMP ESYVHRSDQA 120 SIVSGAIDFV KELEQQLQSL EAQKMALLQR RGDTASERGA PRAPDRGEAA TNSSASVTGE 180 DAAERAPFAR FFRYPQYAWR HAPAREDGGA GAEEASRASA VADVEVGVVV DAHASLRVMA 240 RRRPGQLLKM VAGMQALGLA VLHLNVTAAP GGLALYTLNL KVEEGCGLTT AEDIAAAAHH 300 VLCIIDAEAA AAAAAARSRR GAAGTLFGTC PRPLHRRGLP EHGTNCGCSS SA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 62 | 70 | GRRKRRRRQ |
2 | 63 | 69 | RRKRRRR |
3 | 64 | 68 | RKRRR |
4 | 64 | 71 | RKRRRRQR |
5 | 83 | 94 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG313800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061323 | 1e-118 | BT061323.1 Zea mays full-length cDNA clone ZM_BFb0135D07 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825670.1 | 1e-139 | transcription factor bHLH96-like isoform X1 | ||||
TrEMBL | A0A3L6QAM5 | 1e-150 | A0A3L6QAM5_PANMI; Transcription factor bHLH96-like | ||||
STRING | Pavir.J15346.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3712 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 6e-40 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG313800.1.p |