PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG308300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 446aa    MW: 48719.5 Da    PI: 8.4693
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG308300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-165195147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r +WT++E++l+++a +q+G   W++I +++g  +t+ q++s+ qk+
  Pavir.7NG308300.1.p 51 REKWTEDEHKLFLEALQQHGRA-WRRIQEHIG-SKTAVQIRSHAQKF 95
                         789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.21E-154598IPR009057Homeodomain-like
PROSITE profilePS5129420.13646100IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-948101IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-154998IPR006447Myb domain, plants
SMARTSM007173.5E-135098IPR001005SANT/Myb domain
PfamPF002494.2E-145194IPR001005SANT/Myb domain
CDDcd001673.35E-105396No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MARFQAMNDQ RPAADRVGHA DFMDHLKRTL DSPEGARAPK ARKPYTISKQ REKWTEDEHK  60
LFLEALQQHG RAWRRIQEHI GSKTAVQIRS HAQKFFSKVI RESSGDSNSI AAPPQIHIPP  120
PRPKRKPAHP YPRKLGNSLC KDASTIKQLE KPQLKIQLLS EQENCSPKSV LTAAQIGSQT  180
METEGSGSPA SSVYMEEKGL TPSTSVGELG VQVALSKDAT TSNGAACGIP EGPVLRLFGK  240
RVVVNNLHQQ PNSNTGNLKH AADMELDSSA ETPTSGTGKF SSHGAEEAKT WSPWLTGTQQ  300
FVYYLPQGEV LSVHSACQFL SYSNGSISYG VLNQQTVASN KQQHQPSQAS DCKFTRAEGS  360
WAESITTSSS VPETTTQNSD SIESTQVNND DDEVIPVPGS RKFLSTVPTY LRGFVPYRKC  420
TAQSKMLQSQ VPGEEADGDM TRLCL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.347070.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG308300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824173.10.0uncharacterized protein LOC112899782
TrEMBLA0A2S3I9P70.0A0A2S3I9P7_9POAL; Uncharacterized protein
STRINGPavir.Gb00859.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.12e-32MYB_related family protein