PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG305400.10.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 239aa    MW: 25689.4 Da    PI: 4.4652
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG305400.10.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.75.1e-16203236132
                  GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 
                           C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ 
  Pavir.7NG305400.10.p 203 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWAN 236
                           ********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.2E-86297IPR010399Tify domain
PROSITE profilePS5132014.3196297IPR010399Tify domain
PfamPF062002.3E-116596IPR010399Tify domain
PROSITE profilePS5101712.223131173IPR010402CCT domain
PfamPF062031.1E-13131171IPR010402CCT domain
SMARTSM004012.6E-4197238IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.42E-9201236No hitNo description
CDDcd002029.70E-13202237No hitNo description
Gene3DG3DSA:3.30.50.101.4E-13202237IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440203230IPR000679Zinc finger, GATA-type
PfamPF003202.0E-13203237IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MRAAAAAGAS AAPGDDDGED GTGEDEEDGE EVDDEDEDED EEERTAPAPA EEPPAPAPVS  60
ALPGNPNQLT LLFQGEVYVF ESVTPDKVES VLSLLGRGEL PADYAGKVVP SQNENKGYDD  120
ILRRTDIPAK RVASLLRFHE KRKERNFDKK IRYAVHKEVA LRMQRRKGQF AGRASLEGES  180
PAPGCDPGSQ SSGLDFVSRE SKCQNCGTSE KMTPAMRRGP AGPRTLCNAC GLMWANKV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.273120.0callus| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG305400.10.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793442.11e-125GATA transcription factor 18-like isoform X1
SwissprotQ10F251e-111GAT18_ORYSJ; GATA transcription factor 18
TrEMBLA0A3L6TRR51e-124A0A3L6TRR5_PANMI; Uncharacterized protein
STRINGPavir.J38243.1.p1e-173(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-59ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]