PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG279500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 566aa MW: 61773.9 Da PI: 5.0763 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.6 | 5.3e-14 | 375 | 422 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h + Er+RR+++N+ f L++l+P+ K++Ka+iL k++ Y+k+Lq Pavir.7NG279500.1.p 375 KNHVMSERKRREKLNEMFLVLKSLVPSiH------KVNKASILAKTIAYLKELQ 422 5899***********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.5E-52 | 18 | 201 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 15.135 | 372 | 421 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.67E-16 | 375 | 426 | No hit | No description |
SuperFamily | SSF47459 | 4.71E-18 | 375 | 437 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-17 | 376 | 433 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-11 | 376 | 422 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.9E-16 | 378 | 427 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 566 aa Download sequence Send to blast |
MALPASLVRQ DVPPGRQLRN QLAAAARTIN WSYALFWSIS STQPGILTWT DGFYNGEVKT 60 RKIANSAEQT AEQLVMQRSE QLRELYEALL SGECDRRAAR PVASLSPEDL GDTEWYYVVC 120 MTYAFRPGQG LPGRSFASNE HIWLCYAQHA DSKAFPRALL AKGASIQTIV CIPLMSGVLE 180 LGTTDPVVED PDLVSRATAS FWDMQFPACS EEPSSSPSAN ETGKAADIIV LEDLDHNAME 240 IAGGQELDEA ESLSNATLEH ITKEIDEFYS LCEEMDVQPL EDSWIMDGSF EVPSSPQPAA 300 GASTDDAAIS STLFGGSRAT SFAAWIGSAS DSGEVAVPVI EEPQKLLKKV VAGGAWANNG 360 GGGTTRTTQE GGIIKNHVMS ERKRREKLNE MFLVLKSLVP SIHKVNKASI LAKTIAYLKE 420 LQRRVHELES SREPISRPSE TRRLTKRHDD GIARKKVSAG AKRKGSELGG DMERERPWDL 480 SKDGTSNVTV TVSDKDVLLE VQCRWEELLM TRVFDAIKSL HLDVLSVQAS APDGFMGLKI 540 RAQFASSAAV VPWMISDALR KAIGK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 4e-21 | 30 | 201 | 23 | 192 | Transcription factor MYC3 |
4rqw_B | 4e-21 | 30 | 201 | 23 | 192 | Transcription factor MYC3 |
4rs9_A | 4e-21 | 30 | 201 | 23 | 192 | Transcription factor MYC3 |
4yz6_A | 4e-21 | 30 | 201 | 23 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 380 | 385 | ERKRRE |
2 | 381 | 386 | RKRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG279500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823475.1 | 0.0 | anthocyanin regulatory R-S protein-like isoform X2 | ||||
Swissprot | P13526 | 0.0 | ARLC_MAIZE; Anthocyanin regulatory Lc protein | ||||
TrEMBL | A0A2S3I998 | 0.0 | A0A2S3I998_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb01093.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP932 | 33 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 8e-74 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG279500.1.p |
Publications ? help Back to Top | |||
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