PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG265400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 262aa MW: 29217.6 Da PI: 5.2529 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.1 | 8.4e-20 | 61 | 114 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le++F+ + ++ +e++eLA++lgL+ rqV +WFqN+Ra+++ Pavir.7NG265400.1.p 61 KRRFTEEQIRSLESMFQAhHAKLEPREKAELARQLGLQPRQVAIWFQNKRARWR 114 458**************9899********************************9 PP | |||||||
2 | HD-ZIP_I/II | 122.5 | 2.1e-39 | 59 | 152 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 e+krr+++eq+++LE++F++++ kLep++K+elar+Lglqprqva+WFqn+RAR+++kqlE+dy+aL++++dal+++ e L++e+ +L++ Pavir.7NG265400.1.p 59 ERKRRFTEEQIRSLESMFQAHHaKLEPREKAELARQLGLQPRQVAIWFQNKRARWRSKQLEHDYAALRDKFDALHARVEPLKQEKLALAA 148 69******************999******************************************************************* PP HD-ZIP_I/II 90 elke 93 +l+e Pavir.7NG265400.1.p 149 QLQE 152 *987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.47E-18 | 49 | 118 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.686 | 55 | 116 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-19 | 58 | 120 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.78E-17 | 60 | 117 | No hit | No description |
Pfam | PF00046 | 3.4E-17 | 61 | 114 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-20 | 61 | 123 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.9E-7 | 87 | 96 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 91 | 114 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.9E-7 | 96 | 112 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.4E-13 | 116 | 157 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MDRPDRHQHQ FFMPLPVLQQ QQQQLCAPMM DEHEQASFLA GRAGGGGGGG GGGAAGRGER 60 KRRFTEEQIR SLESMFQAHH AKLEPREKAE LARQLGLQPR QVAIWFQNKR ARWRSKQLEH 120 DYAALRDKFD ALHARVEPLK QEKLALAAQL QELSERLRER EDHRAASGGV AATASSSCCN 180 GGEEEAEDDK RNVVLRCVDM EPPESCVLAG ACATPPADVS VESECDDHHR LDYDDGLFPE 240 SFCATPELWE PWPLVEWNAV A* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG265400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728250 | 0.0 | KJ728250.1 Zea mays clone pUT6527 HB transcription factor (HB66) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826405.1 | 1e-134 | homeobox-leucine zipper protein HOX22-like | ||||
Swissprot | Q01IK0 | 2e-92 | HOX22_ORYSI; Homeobox-leucine zipper protein HOX22 | ||||
Swissprot | Q7XUJ5 | 2e-92 | HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22 | ||||
TrEMBL | A0A2S3I915 | 1e-133 | A0A2S3I915_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga00670.1.p | 1e-133 | (Panicum virgatum) | ||||
STRING | Pavir.J33909.1.p | 1e-134 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4027 | 31 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 5e-28 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG265400.1.p |