PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG253900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CO-like
Protein Properties Length: 327aa    MW: 34497.4 Da    PI: 5.2784
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG253900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.74.9e-082056437
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                         r C+e++ + ++l+C+ +  +lC+ C    H g    H
  Pavir.7NG253900.1.p 20 RPCDECGAEAARLYCRADAAFLCAGCDARAH-GagsrH 56
                         68*************************9999.435567 PP
2zf-B_box22.23e-0759102340
             zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 
                           + C+ +e+ ++   C+ +   lC++C   +H+       H+++
  Pavir.7NG253900.1.p  59 VWLCEVCEHAPAAVTCRADAAALCASCDADIHSAnplarrHERQ 102
                          679*****************************657888888876 PP
3CCT70.15.6e-24238281144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  Pavir.7NG253900.1.p 238 REARLMRYREKRKSRRFEKTIRYASRKAYAETRPRIKGRFAKRT 281
                          9****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.3E-81761IPR000315B-box-type zinc finger
PROSITE profilePS5011910.6651761IPR000315B-box-type zinc finger
PfamPF006432.6E-62056IPR000315B-box-type zinc finger
CDDcd000211.71E-92061No hitNo description
PROSITE profilePS501199.58457104IPR000315B-box-type zinc finger
PfamPF006431.8E-559103IPR000315B-box-type zinc finger
CDDcd000211.17E-760104No hitNo description
SMARTSM003362.1E-862104IPR000315B-box-type zinc finger
PROSITE profilePS5101716.876238280IPR010402CCT domain
PfamPF062039.2E-18238280IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEGDKKSAGG APAYWGLGAR PCDECGAEAA RLYCRADAAF LCAGCDARAH GAGSRHARVW  60
LCEVCEHAPA AVTCRADAAA LCASCDADIH SANPLARRHE RQTVAPFYGA LADAPKPFAS  120
SVAVPKAADD DGSNEAEAAS WLLPEPDHGH KEGATTEVFF ADSDPYLDLD FARTMDDIKA  180
IGAQNGPAGA ELDLTGAKLF YSDHSMNYSV SSSEAAVVPD AAAGAAPVVP VVSRGLEREA  240
RLMRYREKRK SRRFEKTIRY ASRKAYAETR PRIKGRFAKR TPGPGADGED PLEEHEEEMY  300
SSAAAAVAAL MAPGGADADY GVVPTY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.19190.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG253900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279840.0KJ727984.1 Zea mays clone pUT6100 C2C2-CO-like transcription factor (COL7) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825843.10.0zinc finger protein CONSTANS-LIKE 3-like
SwissprotQ9SK533e-72COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A2S3I8050.0A0A2S3I805_9POAL; Uncharacterized protein
STRINGAC233888.1_FGP0020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.11e-46CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]