PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG233500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 402aa    MW: 44262.7 Da    PI: 5.19
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG233500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.43.8e-29572021128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77 
                          lp+G++F+P+d el+ ++L+ k + ++      +   +    +i+e+ +i++++P++Lp  +k + ++ +fF+k +++y  g+rk+r+  
  Pavir.7NG233500.1.p  57 LPAGVKFDPSDLELL-QHLQGKSSVQNsnshalI---DdfipTIEELgGICYTHPKNLP-GIKMDGSSAHFFHKVSNAYGCGHRKRRKis 141
                          799************.889999877774555442...144435999988**********.66778899*******************867 PP

                  NAM  78 .......tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyrl 128
                                  ++ +W++tg +k++++++g ++g kk+Lv+ykg+++ g    + +Wvmh+y+l
  Pavir.7NG233500.1.p 142 gndrsvcDEHMRWHKTGASKPIYDENGFKKGWKKILVLYKGSKRCGGkidRDNWVMHQYHL 202
                          877777655788*****************************998876333789******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-3442221IPR003441NAC domain
PROSITE profilePS5100528.61757221IPR003441NAC domain
PfamPF023652.6E-1158202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MENSWIMTGV GLVKRIRNAT HLISLRLGEL VAEPYIKCPN CECGIDTTNV SLVWPELPAG  60
VKFDPSDLEL LQHLQGKSSV QNSNSHALID DFIPTIEELG GICYTHPKNL PGIKMDGSSA  120
HFFHKVSNAY GCGHRKRRKI SGNDRSVCDE HMRWHKTGAS KPIYDENGFK KGWKKILVLY  180
KGSKRCGGKI DRDNWVMHQY HLGADEDEAD GELVVSKVFY QLLAKKNDKS GMDDVELGSE  240
PSAAKIDPRT PNSEPSVSKI DPRTPKTDPP QPHLPSNSPC NTEQYTPIQA DQEEEECGTS  300
IRRVKVEGAE CSAWFAELPP AIVVADLPAS DEPRQLRDAP PVSPEPEATI PVNGSNTDLF  360
NGLTDLDTTF PCLGTPSDSI ADIQFGSQDS FGGWLDSFKF Y*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.357890.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG233500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824945.10.0SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X2
TrEMBLA0A2S3I7M80.0A0A2S3I7M8_9POAL; Uncharacterized protein
TrEMBLA0A2T7CWA80.0A0A2T7CWA8_9POAL; Uncharacterized protein
STRINGPavir.Gb01338.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.13e-68NAC family protein