PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG224600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 343aa    MW: 36738.8 Da    PI: 8.5023
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG224600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.3e-12274319655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri +++ +L+ l+P+     +k  s a++L +Av++I+ Lq
  Pavir.7NG224600.1.p 274 SIAERERRTRISEKLRKLQALVPNM----DKQTSTADMLDLAVDHIRGLQ 319
                          689*********************7....688****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.475268318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-15271335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.90E-13272323No hitNo description
Gene3DG3DSA:4.10.280.104.9E-14273332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-13274324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-9274319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDPPPQRGRS RYGGGGGGSG QQFPFVVDPT EAPGAAAVRA FFPAPGGEPP PPSGDRAAPG  60
HQQQRYGRGE ISLGHGQGMH HHRYHQFGVE GKRDAGPSAA APLPRHSSSP PEFFSSPVVD  120
NGFPNARSGV GVGGEVHHAM SSYHKKMKAP MNLAGQGTLS HISEDGIPDL TSNVHGIGHS  180
EENITANGVA RSFSSGFSIE PWEDSNSIVF SNPPASKAGI HNNDDIIASL SNYELQFGVT  240
KETAGLDKYL QMQQADQVPF RVRAKRGCAT HPRSIAERER RTRISEKLRK LQALVPNMDK  300
QTSTADMLDL AVDHIRGLQS ELQALKEDKE KCTCRGNHPS GR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG224600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825346.10.0transcription factor bHLH129-like
TrEMBLA0A2T7CWM60.0A0A2T7CWM6_9POAL; Uncharacterized protein
STRINGPavir.Gb01377.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141882026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-41bHLH family protein