PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG220500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 376aa    MW: 40985.1 Da    PI: 6.2385
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG220500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA37.82.6e-125179735
                 GATA  7 tkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         t TplWR+gp  ++ LCnaCG ++r kg+
  Pavir.7NG220500.1.p 51 TGTPLWRNGPPDKPVLCNACGSRWRTKGS 79
                         78********55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.00164691IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-65183No hitNo description
Gene3DG3DSA:3.30.50.102.8E-85179IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.8E-105179IPR000679Zinc finger, GATA-type
CDDcd002025.28E-105378No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MFPTLMAPFL DTSKCGINSC GQWATVPILT YTPLIFCEID FDGFLMGNAG TGTPLWRNGP  60
PDKPVLCNAC GSRWRTKGSL ANYTPMHRKD DIDDDEPRVS KLKPPTSKFK SQKKKASHII  120
MENVLFSGQN FRKMGDADTS NRSSLGSAIS YSESCAPYGD VDASEMSGSA QSHAWESLVP  180
SRKRSCVTRP KASPVEKLVK DLKSIMHEDQ LYYLSGSSEE DLLYHSETPV GSFEIGSGSV  240
LLRHPNSKSP EEESEASSIP SDGKSYITSE SYSGSPLFVV HDVNKGTVNL KAGIAGPKRL  300
PLHIEDNASR DKLHCDKQHI LESIDSPLVS VDLEEKEIKE IGVVENISES IGFAGSTMKL  360
LKRSHDTHIQ GDSGL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.178660.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG220500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0670300.0BT067030.1 Zea mays full-length cDNA clone ZM_BFb0155L18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825664.10.0GATA transcription factor 26-like isoform X3
TrEMBLA0A2T7CWR20.0A0A2T7CWR2_9POAL; Uncharacterized protein
STRINGPavir.Gb01403.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-58GATA transcription factor 26