PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG216500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Nin-like | ||||||||
Protein Properties | Length: 942aa MW: 102706 Da PI: 6.5077 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 84.8 | 8.1e-27 | 566 | 616 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+ sl++l+kyFs++++dAA +Lgvc+T+LKriCRq+GI+RWP+Rki+++ Pavir.7NG216500.1.p 566 EKNFSLDVLRKYFSGSLRDAAMSLGVCPTTLKRICRQHGISRWPSRKISKV 616 899*********************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.847 | 555 | 636 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.5E-24 | 569 | 616 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 6.45E-24 | 830 | 924 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.9E-22 | 836 | 918 | No hit | No description |
PROSITE profile | PS51745 | 25.156 | 839 | 921 | IPR000270 | PB1 domain |
SMART | SM00666 | 3.1E-20 | 839 | 921 | IPR000270 | PB1 domain |
Pfam | PF00564 | 5.3E-17 | 840 | 920 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 942 aa Download sequence Send to blast |
MDMPMPSNRA GCNGNISSPM GSSDDPFGVA ATMNFDGYSE LCSPSVADQI FSMLNDPSAA 60 QQMFAMWSSL GSSPRASAMR DDMPFDTYSG PMDATAASTQ RSNSVSALSP TGVDRELKVS 120 DELVPQNGLQ QGSNIIPRSV GNFLADKMLM ALSLFRKSLS DGVLAQVWMP VEHDGRVVLS 180 TFEQPFLLDQ DLAGYREVSR NFLFSVKEEP GLHLGLPGRV FISGVPEWTS SVLYYSKPEY 240 LRMDHALRHD IRGSLAMPIY DPSKGSCCAV LELVTNKEKS DFDAEMDSVC NALQAVNLLT 300 TTDRSNQKVY SENQKSAFTE ILDVLRAICH AHMLPLALTW VPTSNGINNG YGAGKNIGVD 360 SQSGKSVLRI HESACYINDA KMQGFLHACT ERHLEKGEGI AGRALKSNLP FFSPDIKEYS 420 IEDYPLAHHA RKFGLHAAVA IRLRSTYTGN DDYILEFFLP VNCKGCGEQQ MLLNNLSSTM 480 QRICKSLRTV SEAEDDNAGA SGTAMHKKTN GTLPTGNTES SSHDDQPITE SAFQDLSLGD 540 KQGDREPDQA HSSSMRVAEK KRSTSEKNFS LDVLRKYFSG SLRDAAMSLG VCPTTLKRIC 600 RQHGISRWPS RKISKVNRSL KKIQTVINSV HGVDRSLQYD PATGSLVPAA SLPDKMQFSA 660 CDTLPTSSVG KSMEKKSSPK SEQGFSSPDG WQRETCQFHV SSISKREDDE VRMLANNNNG 720 RRNCASDVAK VTPHSNSEGA KGPLYTTGAV NSLCTREIVY INSPTSLHPS IDSAEDPTMG 780 RNSSLVQQAD VTMVDGHDTK EHIHPSTSGT TDSSSGSASS QPTFKGNLGN APKDRSSPAL 840 TVKATYNGDT VRFKFLPAMG WYHLLEQIAK RFKLTTGAFQ LKYKDDEDEW VILANDSDLQ 900 ECVDILDSIG SRNVKLQVRD LPCHISSSGS SSCLQVEAHS P* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7977 | 0.0 | callus| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG216500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727756 | 0.0 | KJ727756.1 Zea mays clone pUT5699 NLP transcription factor (NLP3) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823107.1 | 0.0 | protein NLP2-like | ||||
Swissprot | Q0JC27 | 0.0 | NLP2_ORYSJ; Protein NLP2 | ||||
TrEMBL | A0A2S3I833 | 0.0 | A0A2S3I833_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J35714.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3670 | 35 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59580.2 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG216500.1.p |
Publications ? help Back to Top | |||
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