PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7NG214300.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

S1Fa-like

Protein Properties

Length: 81aa MW: 8835.54 Da PI: 10.4802

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7NG214300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	135.3	1.5e-42	11	80	2	70
S1FA 2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +v ++e+ kGlnPG+ivllvv+++ll+f+vgny+lyvyaqk+lPP+kkkPvskkklkreklkqGv++PGe Pavir.7NG214300.2.p 11 NVIIEEVnKGLNPGMIVLLVVASFLLLFFVGNYALYVYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE 80 55667778*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	3.0E-8	12	80	No hit	No description
Pfam	PF04689	1.5E-39	16	80	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
MADQFADSAN NVIIEEVNKG LNPGMIVLLV VASFLLLFFV GNYALYVYAQ KTLPPKKKKP 60 VSKKKLKREK LKQGVSAPGE *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.3123	6e-91	callus\| leaf\| root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7NG214300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT016336	7e-87	BT016336.1 Zea mays clone Contig169 mRNA sequence.
GenBank	EU953686	7e-87	EU953686.1 Zea mays clone 1444070 DNA-binding protein S1FA2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975537.1	1e-50	DNA-binding protein S1FA2
Swissprot	Q7XLX6	1e-34	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	A0A368RVD0	3e-49	A0A368RVD0_SETIT; Uncharacterized protein
STRING	Pavir.Gb01773.1.p	1e-42	(Panicum virgatum)
STRING	Si011030m	2e-42	(Setaria italica)

Link Out ? help Back to Top
Phytozome	Pavir.7NG214300.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]