PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG211300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family E2F/DP
Protein Properties Length: 488aa    MW: 52565.5 Da    PI: 7.5935
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG211300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP794.4e-25163228171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          r+++sL llt+kf++ll+++++gi++ln+ a++L   dv  ++RRiYDi+NVLe+++liekk kn i wkg
  Pavir.7NG211300.1.p 163 RYDSSLALLTRKFINLLKQAQDGILDLNSTADKL---DV--QKRRIYDITNVLEGIGLIEKKLKNIICWKG 228
                          6899******************************...**..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-26161229IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.4E-32163228IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.9E-16163226IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023195.9E-22165228IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.00E-41238344No hitNo description
SuperFamilySSF1440741.99E-29240345No hitNo description
PfamPF164216.5E-30243343IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MKIRWGNSPR LAVKKMSGGA RAAAAQQIVQ SLQRCAALPP AGPPFADALG DYHRFPRPSS  60
AAAAAAAAPL AGGHGGFEEG IVVGTPLKRK APYGESNTAE SLELVMTSPG FIGGVGSPLR  120
APVSGKSART YKSKAKCSKP VPQTPISNAA PPGNPPTPAG PCRYDSSLAL LTRKFINLLK  180
QAQDGILDLN STADKLDVQK RRIYDITNVL EGIGLIEKKL KNIICWKGLG ESGTNLDNDL  240
SILKNEVENL NLQEQALDEH ISKMHKELKA LTEDESRQRW LFLTEDDIKG LPCFQNQTLI  300
AIKAPHGSSV EVPNPDVMTG ESFQRRYRII IRSTTGPIDL YLVSNFEMKS EEKLDDTATL  360
ASQTHLAKRA SSVKGPRTKR AGRSRSKEVE VNAQQIHKTP DLNAPHPSEG VLRKIDASDV  420
NTDADYWLLT DADVSITDMW RTAPEMQLDQ IDPNDFLSEE VSTPGPGTLD QQPAAIGEPT  480
AGGPNHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-24158230275PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.278110.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG211300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824202.10.0transcription factor E2FA-like isoform X2
TrEMBLA0A2T7CUR90.0A0A2T7CUR9_9POAL; Uncharacterized protein
STRINGPavir.J29330.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-106E2F transcription factor 3