PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7NG210000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 497aa MW: 54033 Da PI: 4.8549

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7NG210000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.4	1.3e-13	306	353	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h + Er+RR+++N+ f L++l+P+ + K++Ka+iL +++ Y+k+Lq Pavir.7NG210000.1.p 306 KNHVISERKRREKLNEMFLVLKSLVPSiN------KVNKASILAETIAYLKELQ 353 57999********************77......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	4.8E-35	2	126	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	15.231	303	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.37E-18	306	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.7E-15	306	357	No hit	No description
Pfam	PF00010	5.1E-11	307	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-17	307	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.0E-15	309	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MQRSEQLREL YEALLSGDCD RRAARPVASL SLEDLGDTEW YYVVCMTYAF RPGQGLPGRS 60 FASNEHVWLC NAQHADSKAF PRALLAKGAS IQTIVCIPLM SGVLELGTTD PVVEDPDLVS 120 RATASFWEMQ FPACSEEPSS SPAANETGKA ADIIVLEDLD HNAMETMIAG GQELDESESL 180 SNATLEHITK EIDEFYSLCE EMDVQPLEDS WIMDGSFQVP SSPVSSPQPA AGASTNDAAI 240 SSTPVGGSRV TSFTAWTRSA SDSGEVAVLV IEEPQKLLKK VVTGGAWANN GGGGTTTTTQ 300 EGGIIKNHVI SERKRREKLN EMFLVLKSLV PSINKVNKAS ILAETIAYLK ELQRRVHELE 360 SSREPISRPS ETRRLTKRHD DGIARKKVSA GSKRKGSELG GDMEREQPWG PSKDGTSNVT 420 VTVSDKDVLL EVQCRWEELL MTRVFDAIKS FHLDVLSVQA SAPDGFMGLK IRAQFASSAA 480 VVPWMISEAL RKAIGK*

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MQRSEQLREL YEALLSGDCD RRAARPVASL SLEDLGDTEW YYVVCMTYAF RPGQGLPGRS  60
FASNEHVWLC NAQHADSKAF PRALLAKGAS IQTIVCIPLM SGVLELGTTD PVVEDPDLVS  120
RATASFWEMQ FPACSEEPSS SPAANETGKA ADIIVLEDLD HNAMETMIAG GQELDESESL  180
SNATLEHITK EIDEFYSLCE EMDVQPLEDS WIMDGSFQVP SSPVSSPQPA AGASTNDAAI  240
SSTPVGGSRV TSFTAWTRSA SDSGEVAVLV IEEPQKLLKK VVTGGAWANN GGGGTTTTTQ  300
EGGIIKNHVI SERKRREKLN EMFLVLKSLV PSINKVNKAS ILAETIAYLK ELQRRVHELE  360
SSREPISRPS ETRRLTKRHD DGIARKKVSA GSKRKGSELG GDMEREQPWG PSKDGTSNVT  420
VTVSDKDVLL EVQCRWEELL MTRVFDAIKS FHLDVLSVQA SAPDGFMGLK IRAQFASSAA  480
VVPWMISEAL RKAIGK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	3e-13	33	126	99	192	Transcription factor MYC3
4rqw_B	3e-13	33	126	99	192	Transcription factor MYC3
4rs9_A	3e-13	33	126	99	192	Transcription factor MYC3
4yz6_A	3e-13	33	126	99	192	Transcription factor MYC3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	311	316	ERKRRE
2	312	317	RKRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7NG210000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823475.1	0.0	anthocyanin regulatory R-S protein-like isoform X2
Swissprot	P13526	0.0	ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBL	A0A2S3I998	0.0	A0A2S3I998_9POAL; Uncharacterized protein
STRING	Pavir.J34298.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP932	33	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	7e-39	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.7NG210000.1.p

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Ludwig SR,Habera LF,Dellaporta SL,Wessler SR Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region. Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6 [PMID:2674946] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]