PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG191900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 201aa    MW: 23248.9 Da    PI: 8.0917
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG191900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.61.9e-241056248
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                         rien   rqvtf+kRr g+lKKA+ELSvLCda++ vi++s++gk+y+
  Pavir.7NG191900.1.p 10 RIENPVHRQVTFCKRRMGLLKKAKELSVLCDADIGVIVVSPHGKIYD 56
                         8********************************************97 PP
2K-box53.51.1e-1878171799
                K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                          ++ e++k++  qqe+  L +ei+  q+ +R + Ge d + ++l eLq Le++Le  l +iR +K++++ ++ie l++ke  lq +n +L+
  Pavir.7NG191900.1.p  78 SESEQNKTQAIQQEVLALTREIDLFQKGLRYIHGEkDTKHMNLGELQALENNLEMWLHNIRFQKMQIMSTEIEMLRNKEGILQAANDTLQ 167
                          3368999***************************857999************************************************** PP

                K-box  96 kkle 99 
                          +++ 
  Pavir.7NG191900.1.p 168 ERII 171
                          9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.525161IPR002100Transcription factor, MADS-box
SMARTSM004325.1E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-27177IPR002100Transcription factor, MADS-box
CDDcd002656.59E-37275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-24323IPR002100Transcription factor, MADS-box
PfamPF003195.3E-231055IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-243859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-2379170IPR002487Transcription factor, K-box
PROSITE profilePS5129712.47685177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MARGKVQMRR IENPVHRQVT FCKRRMGLLK KAKELSVLCD ADIGVIVVSP HGKIYDLATN  60
GNMQGLIERY RSYSEMHSES EQNKTQAIQQ EVLALTREID LFQKGLRYIH GEKDTKHMNL  120
GELQALENNL EMWLHNIRFQ KMQIMSTEIE MLRNKEGILQ AANDTLQERI IEQNRILNFS  180
GTVMIPQAPF QLNMESDCYL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-16183181MEF2 CHIMERA
6byy_B2e-16183181MEF2 CHIMERA
6byy_C2e-16183181MEF2 CHIMERA
6byy_D2e-16183181MEF2 CHIMERA
6bz1_A2e-16183181MEF2 CHIMERA
6bz1_B2e-16183181MEF2 CHIMERA
6bz1_C2e-16183181MEF2 CHIMERA
6bz1_D2e-16183181MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and spikelets (rice flower). {ECO:0000269|Ref.7}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG191900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824407.11e-135MADS-box transcription factor 26-like
SwissprotA2YQK92e-74MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G82e-74MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A2T7CVB81e-134A0A2T7CVB8_9POAL; Uncharacterized protein
STRINGSi012632m1e-129(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-56AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]