PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG176200.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 336aa    MW: 36218.1 Da    PI: 8.0243
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG176200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.11.7e-53111361128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL++kv++ ++ +  ++ e+d++k+ePwdLp+ +k +ekewyfF+ +d+ky+tg r+nrat++gyWkatgkdk
  Pavir.7NG176200.3.p  11 LPPGFRFHPTDEELITHYLARKVADARFAA-LAVGEADLNKSEPWDLPSLAKMGEKEWYFFCLKDRKYPTGLRTNRATQAGYWKATGKDK 99 
                          79*************************999.67***************8888899*********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++++ +++lvg kktLvfy+grapkgek+ Wvmheyrl
  Pavir.7NG176200.3.p 100 DIFR-GKALVGSKKTLVFYTGRAPKGEKSGWVMHEYRL 136
                          ****.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-636162IPR003441NAC domain
PROSITE profilePS5100558.19811162IPR003441NAC domain
PfamPF023654.0E-2912136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEQELHQPME LPPGFRFHPT DEELITHYLA RKVADARFAA LAVGEADLNK SEPWDLPSLA  60
KMGEKEWYFF CLKDRKYPTG LRTNRATQAG YWKATGKDKD IFRGKALVGS KKTLVFYTGR  120
APKGEKSGWV MHEYRLHGKL PGAMPKAAPS KNEWVLCRVF KKSLVVGVAP AARRGAMEMD  180
DIAAISHLPP LMDVSVATAV AGGNPAAAHV TCFSNALEGQ FFNQTTAAPQ AAAPAPATDH  240
LGLASPSPFL SSFAQYGPLH HGGVSLVQLL ESSGYGGGLP DMPKQQQPEA PPCKGGGERE  300
RLSASQDTGL TTSDAHPEIS SSSGQRFDTE QLWGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-53916215165NO APICAL MERISTEM PROTEIN
1ut4_B6e-53916215165NO APICAL MERISTEM PROTEIN
1ut7_A6e-53916215165NO APICAL MERISTEM PROTEIN
1ut7_B6e-53916215165NO APICAL MERISTEM PROTEIN
3swm_A7e-53916218168NAC domain-containing protein 19
3swm_B7e-53916218168NAC domain-containing protein 19
3swm_C7e-53916218168NAC domain-containing protein 19
3swm_D7e-53916218168NAC domain-containing protein 19
3swp_A7e-53916218168NAC domain-containing protein 19
3swp_B7e-53916218168NAC domain-containing protein 19
3swp_C7e-53916218168NAC domain-containing protein 19
3swp_D7e-53916218168NAC domain-containing protein 19
4dul_A6e-53916215165NAC domain-containing protein 19
4dul_B6e-53916215165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.16800.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG176200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0607700.0BT060770.2 Zea mays full-length cDNA clone ZM_BFb0046M18 mRNA, complete cds.
GenBankBT0635430.0BT063543.1 Zea mays full-length cDNA clone ZM_BFc0075B16 mRNA, complete cds.
GenBankBT0844930.0BT084493.2 Zea mays full-length cDNA clone ZM_BFb0122M24 mRNA, complete cds.
GenBankJX4285300.0JX428530.1 Zea mays subsp. mays clone pUT3130 NAC32 NAC type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826317.10.0NAC domain-containing protein 92-like
RefseqXP_025826319.10.0NAC domain-containing protein 92-like
RefseqXP_025826320.10.0NAC domain-containing protein 92-like
RefseqXP_025826321.10.0NAC domain-containing protein 92-like
TrEMBLA0A2T7CVX40.0A0A2T7CVX4_9POAL; Uncharacterized protein
STRINGPavir.Gb01850.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.23e-90NAC domain containing protein 80