PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG176200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 336aa MW: 36218.1 Da PI: 8.0243 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.1 | 1.7e-53 | 11 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yL++kv++ ++ + ++ e+d++k+ePwdLp+ +k +ekewyfF+ +d+ky+tg r+nrat++gyWkatgkdk Pavir.7NG176200.2.p 11 LPPGFRFHPTDEELITHYLARKVADARFAA-LAVGEADLNKSEPWDLPSLAKMGEKEWYFFCLKDRKYPTGLRTNRATQAGYWKATGKDK 99 79*************************999.67***************8888899*********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ +++lvg kktLvfy+grapkgek+ Wvmheyrl Pavir.7NG176200.2.p 100 DIFR-GKALVGSKKTLVFYTGRAPKGEKSGWVMHEYRL 136 ****.99*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.5E-63 | 6 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.198 | 11 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-29 | 12 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MEQELHQPME LPPGFRFHPT DEELITHYLA RKVADARFAA LAVGEADLNK SEPWDLPSLA 60 KMGEKEWYFF CLKDRKYPTG LRTNRATQAG YWKATGKDKD IFRGKALVGS KKTLVFYTGR 120 APKGEKSGWV MHEYRLHGKL PGAMPKAAPS KNEWVLCRVF KKSLVVGVAP AARRGAMEMD 180 DIAAISHLPP LMDVSVATAV AGGNPAAAHV TCFSNALEGQ FFNQTTAAPQ AAAPAPATDH 240 LGLASPSPFL SSFAQYGPLH HGGVSLVQLL ESSGYGGGLP DMPKQQQPEA PPCKGGGERE 300 RLSASQDTGL TTSDAHPEIS SSSGQRFDTE QLWGY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-53 | 9 | 162 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-53 | 9 | 162 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-53 | 9 | 162 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-53 | 9 | 162 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-53 | 9 | 162 | 18 | 168 | NAC domain-containing protein 19 |
3swm_B | 7e-53 | 9 | 162 | 18 | 168 | NAC domain-containing protein 19 |
3swm_C | 7e-53 | 9 | 162 | 18 | 168 | NAC domain-containing protein 19 |
3swm_D | 7e-53 | 9 | 162 | 18 | 168 | NAC domain-containing protein 19 |
3swp_A | 7e-53 | 9 | 162 | 18 | 168 | NAC domain-containing protein 19 |
3swp_B | 7e-53 | 9 | 162 | 18 | 168 | NAC domain-containing protein 19 |
3swp_C | 7e-53 | 9 | 162 | 18 | 168 | NAC domain-containing protein 19 |
3swp_D | 7e-53 | 9 | 162 | 18 | 168 | NAC domain-containing protein 19 |
4dul_A | 6e-53 | 9 | 162 | 15 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-53 | 9 | 162 | 15 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.1680 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG176200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT060770 | 0.0 | BT060770.2 Zea mays full-length cDNA clone ZM_BFb0046M18 mRNA, complete cds. | |||
GenBank | BT063543 | 0.0 | BT063543.1 Zea mays full-length cDNA clone ZM_BFc0075B16 mRNA, complete cds. | |||
GenBank | BT084493 | 0.0 | BT084493.2 Zea mays full-length cDNA clone ZM_BFb0122M24 mRNA, complete cds. | |||
GenBank | JX428530 | 0.0 | JX428530.1 Zea mays subsp. mays clone pUT3130 NAC32 NAC type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826317.1 | 0.0 | NAC domain-containing protein 92-like | ||||
Refseq | XP_025826319.1 | 0.0 | NAC domain-containing protein 92-like | ||||
Refseq | XP_025826320.1 | 0.0 | NAC domain-containing protein 92-like | ||||
Refseq | XP_025826321.1 | 0.0 | NAC domain-containing protein 92-like | ||||
TrEMBL | A0A2T7CVX4 | 0.0 | A0A2T7CVX4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb01850.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.2 | 3e-90 | NAC domain containing protein 80 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG176200.2.p |