PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG164300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 1685aa MW: 181993 Da PI: 6.5313 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.4 | 2.2e-10 | 805 | 847 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE e++ + +++G++ +++I++ + ++t +c+++++k+ Pavir.7NG164300.1.p 805 PWTQEEKEIFMEMLAKFGKD-FSKISSLLV-HKTTADCVEFYYKH 847 8*****************99.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.98E-14 | 790 | 850 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 15.735 | 801 | 852 | IPR017884 | SANT domain |
SMART | SM00717 | 1.4E-10 | 802 | 850 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-8 | 803 | 849 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.1E-8 | 804 | 847 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 12.204 | 1010 | 1061 | IPR017884 | SANT domain |
SMART | SM00717 | 1.3E-4 | 1011 | 1059 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.48E-8 | 1014 | 1061 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00286 | 1015 | 1053 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1685 aa Download sequence Send to blast |
MPPPPPDRRD YLYREGRRHD GGGGGEPLLP PAPTPPRWRD SPYHPPPPPL RDHARPSPRR 60 APPSASSEGY YRQGGGAYDR SFPDEPPIGH TPSRSDRYWA EDDGGGCKGF GRYGGGGRRD 120 GRDMRGSYRR SPFRGYGSDI SRNHTEQPPP PPPRRSPLRS VAVPICYDPP GNRVDKGDRD 180 NLARVTPWRR RESRSEIADA AGAGPVSVGQ TNRPAPSEKA SAQPLAGAAP HGADEEAPRK 240 KARLGWGQGL AKYEKQKVQG PADLAEAVVD GSPADTEQKA AFPVPPPEPP AAPAPPPEPP 300 AAPEPPAPAP VPPAAPASAA VYVPASVSAS SPARCTSPVD APSSAAPFCT SGPEDKSCEQ 360 TANTVINPTK DVPEAGDKTF NNEFSIKLDQ LGDDPINSLA NMLADVLQHD DSCSGDSKGP 420 TSASKLLLLK ESISKEIEKT ELEIDLLEGE LKSVNSEAGT AAEGSPTGVT YAENISPSSG 480 TSKVPVSVEI SETSHVMKEP GELISSPKPP SVQDVDAKGS DMMEIETAPV RNAKTVSSEE 540 SAVSPVVAED PACAAAVLSP LKASEGAGSQ IDMHNDRLET SPCHDNAESI KTEVSDDPPV 600 RQCPHHDHKY SLFGSVTSAN NNIAKVMNES LFKSLPADTL HLDLVAPSHH LSQSKNDHRI 660 KERLGVFKNR LRLKEQILTL KFKAYRHLWK EDLRLLSAKK QRSKSNKRID QSNRASHIGS 720 QRQRSSNRSR LAMPAGNLSI FLTPEMSDVA SKLFSEFQIK RCRNYLKMPA LIIDEREKEC 780 LRFASKNSMV DDPVLVEKER VMINPWTQEE KEIFMEMLAK FGKDFSKISS LLVHKTTADC 840 VEFYYKHHKS DSFREVKKLL DLRQHQPTGN FLGAKSGKKW NPEANAASLD MLGVASVVAA 900 HGLEYANRVE KVSAKSLIRA AYGSNASFAA KKSSDRECIN NAPLNERESV AADVLAGICG 960 TLSPEGMGSC ITSSADLGKI SMTRMEHILA PEFDRSIDEE DSLSDEECEV DPVDWNDNEK 1020 SIFIEAMNNY GKDFARISSC VKSKSYEQCK VFFSKARKSL GLDLIHQGAA DVSVPTSDTN 1080 GGRSDTDEAC AAEMDSAICS TQSCSKIEMV CPTEKDIGGI ITKQPELNIS NGFDVVNSKT 1140 GEDEKKTEKK CGIVDHERFD EGTHQAACGP IDINCPESTE KLHGKDDVID QVNMHNNSAI 1200 SSSTEQAKAV PSEVQSCLDS VEVLHQTSKS PLGTGTDASQ MEECSNHALD DKLMKAGNSG 1260 ASSCIASDKC IRDNVHFANT ISPTFASSYK HSVPADMPPT KPKPLVTPLT PKDLMPVQFS 1320 SAVPDPTAIR FDGIASITMP NFEDSGNRVS SSLGPKDMSK YPAFKDPTGN QHVTLFRNVD 1380 GYTNHLTTEL PIFSERTASG TVSTSQTDRF TLTKFQNGRS SSLGLPNTSD GIQWARKHEE 1440 VLQGSLRSCS HNTSSDGDEQ QKRPGDVKLF GKILSHQSSL QSSVSSCNGN KSKPPSPKVD 1500 TSSVRLSNNP RDRVVCSSRP GFTHLGLEER TARSYGHLDG STTQPEPLLM MAKCQSLAGV 1560 PFYSAKNGTV SVFSDYQQPS IQPHQSDPKR LERFSDPQKR NGMEFISGFQ QPGKISRFGG 1620 AGILVSGVSD PVAALKAQYG PSSKVMGSDV DPWKDIGSSS IPFASLTCQQ WHSAVGSLEV 1680 LSTG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 698 | 704 | KKQRSKS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.3251 | 0.0 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG164300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807439.1 | 0.0 | uncharacterized protein LOC112885940 isoform X2 | ||||
TrEMBL | A0A3L6STJ3 | 0.0 | A0A3L6STJ3_PANMI; Uncharacterized protein | ||||
STRING | Si020953m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6299 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 3e-77 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG164300.1.p |