PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG148900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 272aa    MW: 28149.4 Da    PI: 4.2866
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG148900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-184293156
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g+
  Pavir.7NG148900.1.p 42 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 93
                         5799******.**********843...4*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.12E-2742101No hitNo description
PfamPF008479.6E-114392IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-2943100IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-2143100IPR016177DNA-binding domain
SMARTSM003803.1E-3243106IPR001471AP2/ERF domain
PROSITE profilePS5103221.56243100IPR001471AP2/ERF domain
PRINTSPR003671.4E-84455IPR001471AP2/ERF domain
PRINTSPR003671.4E-86682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MNFSSYFFSS SSSSSSADKK SSSSSSSKRR QPQAPQPDAN TTRYLGVRRR PWGRYAAEIR  60
DPATKERHWL GTFDTAEEAA VAYDRAARSL RGARARTNFA YPDLPPGSSI TPYLSPDLTS  120
GDNAAQLLQP FYADPAASLP PAAQPANGAG GDYASYGGGY SAEDMSALMD DLAIPDDLPA  180
DDYAVDAAGG AMDLSSVYGG SGGACNASAG GGWCDASELS AYGASPAAAS SHGVYFEEGY  240
VHSPLFSPMP AADDACADGF QLGGSSSSYY Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-183999162ATERF1
3gcc_A4e-183999162ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.279331e-33root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG148900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975472.11e-127ethylene-responsive transcription factor LEP
TrEMBLK3YEC41e-126K3YEC4_SETIT; Uncharacterized protein
STRINGPavir.Gb01913.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-24ERF family protein