PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.7NG082000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 403aa MW: 40108.9 Da PI: 6.9806 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.5 | 6.7e-10 | 252 | 299 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq Pavir.7NG082000.1.p 252 SHSLAERVRRERISERMKMLQSLVPGC----NKITGKALMLDEIINYVQSLQ 299 8**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.01E-11 | 246 | 303 | No hit | No description |
SuperFamily | SSF47459 | 4.58E-17 | 246 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.0E-17 | 248 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.694 | 248 | 298 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.7E-7 | 252 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-10 | 254 | 304 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 403 aa Download sequence Send to blast |
MADEHFFPGP GDFPSGLGAA PFIGASYSYA PPGAGLDAAE MQGLGLAWAD LQLPDSSGAA 60 HFDSALSSLV SSPAHNGSGC GYGDDVAIGD LIGRLGSICA AASASNSCYS TPLSSPPRGA 120 APSPAFRGCC GHPGGASAAA LEAPGAGGRL SRVASSMSLG AGAATPASGS PVAEASRPEM 180 APMGSGSAGT RDPAPPAKKK RKASAGKGKA TSAAVVGGGA AEGKAGADTA AEKEPAKDYI 240 HVRARRGQAT DSHSLAERVR RERISERMKM LQSLVPGCNK ITGKALMLDE IINYVQSLQR 300 QVEFLSMKLA TMNPELDADQ AAAAMLAPPP AAFACSYVAA AAADPSSAAH PAQLVDSYAG 360 AFLPAGWAAQ QGDLHSAAAF DACHDHGHGL HAPPSPPARH GK* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.7NG082000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825248.1 | 0.0 | transcription factor bHLH62-like | ||||
TrEMBL | A0A3L6PRR8 | 0.0 | A0A3L6PRR8_PANMI; Transcription factor bHLH78-like | ||||
STRING | Pavir.J22627.1.p | 1e-172 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12547 | 28 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G07340.1 | 8e-46 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.7NG082000.1.p |