PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG080600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 985aa    MW: 110688 Da    PI: 4.909
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG080600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.9e-14853248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  Pavir.7NG080600.1.p  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                         78*****************************.************986 PP
2Myb_DNA-binding32.81.6e-1060103248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  Pavir.7NG080600.1.p  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                          68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
CDDcd001674.18E-121053No hitNo description
PfamPF139214.6E-131070No hitNo description
SuperFamilySSF466896.47E-2133108IPR009057Homeodomain-like
CDDcd116591.13E-3055106No hitNo description
Gene3DG3DSA:1.10.10.603.4E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.44358107IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118314.6E-60406658IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 985 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPNDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDTRKR KRKRKGIDYN AEIPFEKRPP PGFYDTVGED KPPEHVQFPT  240
TIEDLEGKRR VDIEAQLRKQ DIARNKILQR QDAPAAIMQA NKLNDPEAVT RRSKLMLPPP  300
QISDHELEEI AKMGSAGDPA LAEELGEGST ATRALLSSYS QTPRLGMTPL RTPQRTPAGK  360
GDAIMMEAEN LARLRESQTP LLGGDNPDLH PSDFSGVTPR KKEIQTPNPM ATPLALASPG  420
PGVTPRVGMT PSRDGSSFGI TPKATPFRDE LRINEEVELQ DSTKLELRRQ AELRKSLRSG  480
FASIPQPKNE YQIVMPPITE DEKEEAEERI EEDMSDRLAR ERAEEQARQE ALLRKRSKVL  540
QRSLPRPPAA SVEVLRQSLI KGGESRSRST FVPPTSLEQA DDLINEELLR LLEHDNAKYP  600
LDEKTQKEKK KGNKRQSNAA AVPEIEDFDE DELKEASSLV QEEIQYLRVA MGHENESFED  660
FVKAHDACQE DLMYFPTNNS YGLASVAGNA DKISALQNDF EIVKKRMDEE AKKASRLEQK  720
IKLLTQGYQV RGGKLWSQVQ DTFKQMDTAA TELECFQELQ KQEQLAASYR VRNLTEEVDK  780
QKALERTLQS RYGDLMSVYH RIQEQLEEHK IQLRKQEAIE AENCAREEAA AQNRAAEEEN  840
ERRRNVEVGK EHMNSITDEE PAPAGSKQIN EDQMDVDNTN VDGEFVGPIP PAPDTQGDVI  900
EASAQENSSN APSSDGVTTN GEACDMVDAS NVESQDNASG SLLMDAGNQE DGKNSIPLVG  960
ANEGNTALSS DDAVTNEQND MVAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027963792Cell division cycle 5-like protein
5xjc_L0.027963792Cell division cycle 5-like protein
5yzg_L0.027963792Cell division cycle 5-like protein
5z56_L0.027963792Cell division cycle 5-like protein
5z57_L0.027963792Cell division cycle 5-like protein
5z58_L0.027963792Cell division cycle 5-like protein
6ff4_L0.027963792Cell division cycle 5-like protein
6ff7_L0.027963792Cell division cycle 5-like protein
6icz_L0.027963792Cell division cycle 5-like protein
6id0_L0.027963792Cell division cycle 5-like protein
6id1_L0.027963792Cell division cycle 5-like protein
6qdv_O0.027963792Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIDTRKRKRKRK
2198204KRKRKRK
3199204RKRKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG080600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823518.10.0cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A3L6QAN40.0A0A3L6QAN4_PANMI; Cell division cycle 5-like protein
STRINGPavir.Ga02351.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44163553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]